ViewGene
Locus Name:
GeneID:
Location:

GeneID:379
TrivialName: PA14_59210
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_59210
PAO1 Ortholog Locus:
Sequence Length:1974
Protein Length:657
Start: 5272663
Stop: 5274636
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAP84214.1| (AY273869) DNA helicase [Pseudomonas aeruginosa]
Identities = 657/657 (100%), Positives = 657/657 (100%)
Sequence:
ATGAACCGTCCACGCCTGGTTAATCGTACCTCCGCGACACCTTCGACGCTTCTGCAGCGGGCTATCTTCGAC
GGCTACGACTTCGGCTTGAAGATCCCCTACATCGCAGGCAGCAATCGCGCGCTGCTGGAGCTGTCCGGCTTC
TTCATCAGCGCCCGGGAGCATCCGTTGCACCGCTACTGGCGGGTCCCCAAAGGCAAGCTGCTGCCTGAACTG
GACACTCTGTACAACCGTCTCGCCGAGCTAGCTGGAGGCCTTCACTCCCAGTCCTGGCGGGAGTTCAGCTCC
TTGGTCGAATCCGCGCAGGCCTCGCTTGACCGACAGGCCTTCACCTGGGGGATGCTGCTGCGCATCGCGCCC
CTGGCCGAGGGCGGCGTCCTACTGTCAGGCGAGTTCCATCCTGGTGTTGTGGCGGTGGCTCGGCGGATGCGC
GGGGTATTCCTGCGCCCATCGAGTTCCTGGCGCATCGACACCACTCCCGAGCTGCTCCGAAGCAACCTGATT
CTGGAGCTTGGCCTCGCCGAGGAACAATTCGAGATTCTGGATACTGTCCAGGAGCTGCTCAGCGACGGCAGC
TTCGCGCCGTCGACCGAGCTGCCCAGCATGAGCATCGGCGGTCCACAGCAGGAACCGGCAGCGCCATCCCTG
GAGGACGAGTCAGCCTCTGACATCTACCTCGCCGCGGTGCCGGAGATCGAGCGCACCGAGTACAGCTCGGCT
GATATCGAGGCGGCGCTTCAGGGCTACTCTCTACTGGCCCACCAGCCTGACGGCATCGCTCATCTGCTGCAG
AGAACCAGCGCCTTATTGGCCGACGACATGGGATTGGGCAAGACCCGCCAGGCGGTCATCGCCGCTTCGATC
CGCGCGGCGGGCAGACCAATCCTGGTCATCACCCTGGCTACCCTGCTGATCAATTGGCAGCGGGAGATCCAG
GAGGTCTATCCCTCGGCCACCGTGGCCATCCAGCAGGACACCCCAGAGGCGCAGTGGATCCTCGTCAACTAC
GAGCAGTTGAGCCCCTTCGTCGCCAACGCTTCGCGCTTCGCCGTGATGGTCATCGACGAGGCGCAGCGGATG
AAGGAACCGACGGCGCAATGCACGCGGCACGGTTTCGACATTGCCGCCCAAGTGCCGAACCGCTACCTGCTT
ACCGGCACGCCGGTGCTCAACCGCGAGACAGAGCTGCACACCCTGCTGCGCCTCTCAGGCCACCCCATCGGC
CAACTGCCGCTGAAAGAGTTCTGCGACCGTTTCGCCGGCAACCCGGAGTTCCGCCAGAGTCTGCGGGCGGAG
CTGGGTGACTGGATGCTGCGCAGGCGCAAAGATGTGCTGCCCAGCCTCAAGGGCAAGCAGCGGCAGTTGCTG
AAGGTGGCCCTCTCCACCGAGGAACGCCAGCAATACGACGTGCTGCGCCTCGAGGACCGACCGGTCTTCGCG
CGACTCGGCGCGCTGCGGCGTTACCTGGAAACGGTGAAAGTTCGCGTGGCGATGGACCTGTTGAGCGAGCTC
GACGCAGAGGACAAGGTGATCCTGTTCTGCGAGTTCAAGCCGACCGTGGCTGCGCTGAAGGAACTCTGCGAG
CAGGCCGGACACGGCTGCGTCACGCTGGTGGGCAATGACTCGCTCACCAAGCGGCAGAAGGCGATAGATCGC
TTCCAGCAGGATCCCGACTGCCGAGTGTTCATCTGCACTACGGCGGCCGCAGGGACGGGCAACAACCTCACT
GCGGCGAACTACGTGTTTTTCCTCGGCCTGCCCTGGACTCCCGGTCAGCAGGAACAAGCCGAAGACCGCGCG
TACCGAAACGGCCAGCTCCGCATGGTCGTGGTGAAAATCCCACTGGTCGAGGCCACGATCGACGAGCAACTG
TGGCAACTGCTCAACGCGAAACGCCAGGTTGCCCAGGACCTCATCGAGCCCGAGCAGGTCGACGGAAACCGC
GCGCTTTTAGCCGCAAGCCTAACTGGATAA
Translation:
MNRPRLVNRTSATPSTLLQRAIFDGYDFGLKIPYIAGSNRALLELSGFFISAREHPLHRYWRVPKGKLLPEL
DTLYNRLAELAGGLHSQSWREFSSLVESAQASLDRQAFTWGMLLRIAPLAEGGVLLSGEFHPGVVAVARRMR
GVFLRPSSSWRIDTTPELLRSNLILELGLAEEQFEILDTVQELLSDGSFAPSTELPSMSIGGPQQEPAAPSL
EDESASDIYLAAVPEIERTEYSSADIEAALQGYSLLAHQPDGIAHLLQRTSALLADDMGLGKTRQAVIAASI
RAAGRPILVITLATLLINWQREIQEVYPSATVAIQQDTPEAQWILVNYEQLSPFVANASRFAVMVIDEAQRM
KEPTAQCTRHGFDIAAQVPNRYLLTGTPVLNRETELHTLLRLSGHPIGQLPLKEFCDRFAGNPEFRQSLRAE
LGDWMLRRRKDVLPSLKGKQRQLLKVALSTEERQQYDVLRLEDRPVFARLGALRRYLETVKVRVAMDLLSEL
DAEDKVILFCEFKPTVAALKELCEQAGHGCVTLVGNDSLTKRQKAIDRFQQDPDCRVFICTTAAAGTGNNLT
AANYVFFLGLPWTPGQQEQAEDRAYRNGQLRMVVVKIPLVEATIDEQLWQLLNAKRQVAQDLIEPEQVDGNR
ALLAASLTG*
AnnotationID:388GeneID:379
AnnotatorUID: diggins
Modification Date/Time: 2006-01-27 08:08:33
Gene Name:
Confidence Code:3
GeneProduct:putative DNA helicase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00176,cd00079,KOG1000
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>dbj|BAB76599.1| (AP003598) SWI/SNF family helicase [Nostoc sp. PCC 7120]
          Length = 869

 Score =  144 bits (363), Expect = 2e-33
 Identities = 134/452 (29%), Positives = 211/452 (46%), Gaps = 58/452 (12%)

>gb|AAM40750.1| (AE012245) helicase [Xanthomonas campestris pv. campestris str. ATCC
            33913]
          Length = 1065

 Score =  142 bits (357), Expect = 9e-33
 Identities = 153/549 (27%), Positives = 235/549 (42%), Gaps = 117/549 (21%)







 
Structural Features:
pfam00176, SNF2_N, SNF2 family N-terminal domain. 
CD-Length = 294 residues,  86.4% aligned
Score = 90.0 bits (223), Expect = 1e-18
Identities = 60/267 (22%), Positives = 98/267 (36%), Gaps = 64/267 (23%)

cd00079, HELICc, Helicase superfamily c-terminal domain
CD-Length = 131 residues,  90.1% aligned
Score = 68.8 bits (168), Expect = 2e-12
Identities = 34/120 (28%), Positives = 54/120 (45%), Gaps = 3/120 (2%)

KOG1000, Chromatin remodeling protein HARP/SMARCAL1,
DEAD-box superfamily 
[Chromatin structure and dynamics]
Length = 689
Score =  162 bits (410), Expect = 4e-40
Identities = 117/450 (26%), Positives = 196/450 (43%), Gaps = 58/450 (12%)






   
Genomic Context:






   
Comment:


















    ReferenceID:761




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17903




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:379
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
29474
                           gb|AAP84214.1|
                           (AY273869) DNA helicase [Pseudomonas aeruginosa]
                           657
                           99.99
                           99.99
                           0
                           3341.0
     

     






      

          
GC ORFID: 43381How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_RL089Glimmer Score: 

          
Start: 4536342Stop: 4538315

          
Length: 1974


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_RL089 657 Homolog: XCC1453 / Helicase / X.campestris pv. campestris / ATCC 33913 (AAM40750) translation of RL089Homolog Bit Score 1291.0

          
Other Homologs:  psyr_15may02_Scaffold10_revised_gene1583 (ORF: BLASTX 855.0), t_RL089 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACCGTCCACGCCTGGTTAATCGTACCTCCGCGACACCTTCGACGCTTCTGCAGCGGGCTATCTTCGAC 
GGCTACGACTTCGGCTTGAAGATCCCCTACATCGCAGGCAGCAATCGCGCGCTGCTGGAGCTGTCCGGCTTC 
TTCATCAGCGCCCGGGAGCATCCGTTGCACCGCTACTGGCGGGTCCCCAAAGGCAAGCTGCTGCCTGAACTG 
GACACTCTGTACAACCGTCTCGCCGAGCTAGCTGGAGGCCTTCACTCCCAGTCCTGGCGGGAGTTCAGCTCC 
TTGGTCGAATCCGCGCAGGCCTCGCTTGACCGACAGGCCTTCACCTGGGGGATGCTGCTGCGCATCGCGCCC 
CTGGCCGAGGGCGGCGTCCTACTGTCAGGCGAGTTCCATCCTGGTGTTGTGGCGGTGGCTCGGCGGATGCGC 
GGGGTATTCCTGCGCCCATCGAGTTCCTGGCGCATCGACACCACTCCCGAGCTGCTCCGAAGCAACCTGATT 
CTGGAGCTTGGCCTCGCCGAGGAACAATTCGAGATTCTGGATACTGTCCAGGAGCTGCTCAGCGACGGCAGC 
TTCGCGCCGTCGACCGAGCTGCCCAGCATGAGCATCGGCGGTCCACAGCAGGAACCGGCAGCGCCATCCCTG 
GAGGACGAGTCAGCCTCTGACATCTACCTCGCCGCGGTGCCGGAGATCGAGCGCACCGAGTACAGCTCGGCT 
GATATCGAGGCGGCGCTTCAGGGCTACTCTCTACTGGCCCACCAGCCTGACGGCATCGCTCATCTGCTGCAG 
AGAACCAGCGCCTTATTGGCCGACGACATGGGATTGGGCAAGACCCGCCAGGCGGTCATCGCCGCTTCGATC 
CGCGCGGCGGGCAGACCAATCCTGGTCATCACCCTGGCTACCCTGCTGATCAATTGGCAGCGGGAGATCCAG 
GAGGTCTATCCCTCGGCCACCGTGGCCATCCAGCAGGACACCCCAGAGGCGCAGTGGATCCTCGTCAACTAC 
GAGCAGTTGAGCCCCTTCGTCGCCAACGCTTCGCGCTTCGCCGTGATGGTCATCGACGAGGCGCAGCGGATG 
AAGGAACCGACGGCGCAATGCACGCGGCACGGTTTCGACATTGCCGCCCAAGTGCCGAACCGCTACCTGCTT 
ACCGGCACGCCGGTGCTCAACCGCGAGACAGAGCTGCACACCCTGCTGCGCCTCTCAGGCCACCCCATCGGC 
CAACTGCCGCTGAAAGAGTTCTGCGACCGTTTCGCCGGCAACCCGGAGTTCCGCCAGAGTCTGCGGGCGGAG 
CTGGGTGACTGGATGCTGCGCAGGCGCAAAGATGTGCTGCCCAGCCTCAAGGGCAAGCAGCGGCAGTTGCTG 
AAGGTGGCCCTCTCCACCGAGGAACGCCAGCAATACGACGTGCTGCGCCTCGAGGACCGACCGGTCTTCGCG 
CGACTCGGCGCGCTGCGGCGTTACCTGGAAACGGTGAAAGTTCGCGTGGCGATGGACCTGTTGAGCGAGCTC 
GACGCAGAGGACAAGGTGATCCTGTTCTGCGAGTTCAAGCCGACCGTGGCTGCGCTGAAGGAACTCTGCGAG 
CAGGCCGGACACGGCTGCGTCACGCTGGTGGGCAATGACTCGCTCACCAAGCGGCAGAAGGCGATAGATCGC 
TTCCAGCAGGATCCCGACTGCCGAGTGTTCATCTGCACTACGGCGGCCGCAGGGACGGGCAACAACCTCACT 
GCGGCGAACTACGTGTTTTTCCTCGGCCTGCCCTGGACTCCCGGTCAGCAGGAACAAGCCGAAGACCGCGCG 
TACCGAAACGGCCAGCTCCGCATGGTCGTGGTGAAAATCCCACTGGTCGAGGCCACGATCGACGAGCAACTG 
TGGCAACTGCTCAACGCGAAACGCCAGGTTGCCCAGGACCTCATCGAGCCCGAGCAGGTCGACGGAAACCGC 
GCGCTTTTAGCCGCAAGCCTAACTGGATAA