ViewGene
Locus Name:
GeneID:
Location:

GeneID:3789
TrivialName: PA14_31700
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31700
PAO1 Ortholog Locus:PA2541
Sequence Length:636
Protein Length:211
Start: 2757361
Stop: 2757996
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05929.1|AE004682_1 (AE004682) probable CDP-alcohol phosphatidyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 209/211 (99%), Positives = 209/211 (99%)
Sequence:
ATGATTTCCGTCTATCAACTCAAACCGCGCTTTCAGAATCTTCTTCGTCCCGGCGTGCAGCGCCTCTACCAG
CGCGGCATCACTGCCAACCAGGTGACCCTGGCGGCCTGCCTGCTGTCGCTGCTGGTCGGCGCGCTGGTCGCC
GGTTTCGCCAGCCATCTCTGGCTGTTCGCCCTCGTTCCGCTGTGGATGTTCCTGCGCATGGCGCTGAACGCG
GTGGACGGCATGCTCGCCCGCGAGTTCGGCCAGAAATCCGACCTGGGCGCCTACCTCAACGAACTCACCGAC
GTGATCGCCGACAGCGGCCTGTACCTGCCGTTCGCCCTGTTGCCGGGAGTCAATCCGCTGTGGGTGGTGCTG
GTGGTGCTGCTGGCGGTGATCAGCGAATATGCCGGTGCGCTGGGCACCATGGTCGGCGCTTCGCGCCGCTAC
GACGGCCCGATGGGCAAGAGCGACCGGGCGCTGTGTTTCGGCGTGATCGGTGCCGGGGTAGCCAGCGGCCTG
TTGCCGCTGGCCTGGATCGACTGGCTGATGTTGCTGATCGCGGCCCTGCTGCTGCTGACCATCGGCAACCGT
GTGCGCCAGGGCCTGGCCGAGCTGGCCGCGAGTCGGCGGGGCCGCGACGAGCAGGCCTGA
Translation:
MISVYQLKPRFQNLLRPGVQRLYQRGITANQVTLAACLLSLLVGALVAGFASHLWLFALVPLWMFLRMALNA
VDGMLAREFGQKSDLGAYLNELTDVIADSGLYLPFALLPGVNPLWVVLVVLLAVISEYAGALGTMVGASRRY
DGPMGKSDRALCFGVIGAGVASGLLPLAWIDWLMLLIAALLLLTIGNRVRQGLAELAASRRGRDEQA*
AnnotationID:3796GeneID:3789
AnnotatorUID: diggins
Modification Date/Time: 2005-04-29 10:10:29
Gene Name:
Confidence Code:3
GeneProduct:CDP-alcohol phosphatidyltransferase
Cell Localization:()
Synonyms:pgsA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0558
Secondary Functional Category(ies):putative enzyme
EC Number:2.7.8.5
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58955.1| (AE016876) CDP-alcohol phosphatidyltransferase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 205

 Score =  294 bits (752), Expect = 3e-79
 Identities = 148/205 (72%), Positives = 174/205 (84%)

>gb|AAM35403.1| (AE011678) CDP-alcohol phosphatidyltransferase [Xanthomonas
           axonopodis pv. citri str. 306]
          Length = 205

 Score =  226 bits (577), Expect = 5e-59
 Identities = 120/203 (59%), Positives = 147/203 (72%), Gaps = 1/203 (0%)

>gb|AAM39815.1| (AE012147) CDP-alcohol phosphatidyltransferase [Xanthomonas
           campestris pv. campestris str. ATCC 33913]
          Length = 204

 Score =  207 bits (528), Expect = 3e-53
 Identities = 118/204 (57%), Positives = 142/204 (69%), Gaps = 3/204 (1%)






 
Structural Features:
COG0558, PgsA, Phosphatidylglycerophosphate synthase [Lipid metabolism]
CD-Length = 192 residues,  91.1% aligned
Score = 81.2 bits (200), Expect = 8e-17
Identities = 56/178 (31%), Positives = 86/178 (48%), Gaps = 6/178 (3%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7581




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24723




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33099




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3789_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3789
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6009
                           PA2541_tr
                           translation of PA2541
                           211
                           99.05
                           99.05
                           0
                           1048.0
     

     
     
167590
                           gb|AAG05929.1|AE004682_1
                           (AE004682) probable CDP-alcohol phosphatidyltransferase [Pseudomonas aeruginosa PAO1]
                           211
                           99.05
                           99.05
                           0
                           1048.0
     

     
     
167591
                           gb|AAO58955.1|
                           (AE016876) CDP-alcohol phosphatidyltransferase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           211
                           70.14
                           82.46
                           6
                           752.0
     

     
     
167592
                           gb|AAM35403.1|
                           (AE011678) CDP-alcohol phosphatidyltransferase [Xanthomonas axonopodis pv. citri str. 306]
                           212
                           56.60
                           69.33
                           8
                           578.0
     

     
     
167594
                           gb|AAM39815.1|
                           (AE012147) CDP-alcohol phosphatidyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           217
                           55.29
                           65.89
                           19
                           533.0
     

     






      

          
GC ORFID: 46791How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2541Glimmer Score: 

          
Start: 2196565Stop: 2195930

          
Length: 636


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2541 translation of PA2541Homolog Bit Score 408.0

          
Other Homologs:  t_PA2541 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATTTCCGTCTATCAACTCAAACCGCGCTTTCAGAATCTTCTTCGTCCCGGCGTGCAGCGCCTCTACCAG 
CGCGGCATCACTGCCAACCAGGTGACCCTGGCGGCCTGCCTGCTGTCGCTGCTGGTCGGCGCGCTGGTCGCC 
GGTTTCGCCAGCCATCTCTGGCTGTTCGCCCTCGTTCCGCTGTGGATGTTCCTGCGCATGGCGCTGAACGCG 
GTGGACGGCATGCTCGCCCGCGAGTTCGGCCAGAAATCCGACCTGGGCGCCTACCTCAACGAACTCACCGAC 
GTGATCGCCGACAGCGGCCTGTACCTGCCGTTCGCCCTGTTGCCGGGAGTCAATCCGCTGTGGGTGGTGCTG 
GTGGTGCTGCTGGCGGTGATCAGCGAATATGCCGGTGCGCTGGGCACCATGGTCGGCGCTTCGCGCCGCTAC 
GACGGCCCGATGGGCAAGAGCGACCGGGCGCTGTGTTTCGGCGTGATCGGTGCCGGGGTAGCCAGCGGCCTG 
TTGCCGCTGGCCTGGATCGACTGGCTGATGTTGCTGATCGCGGCCCTGCTGCTGCTGACCATCGGCAACCGT 
GTGCGCCAGGGCCTGGCCGAGCTGGCCGCGAGTCGGCGGGGCCGCGACGAGCAGGCCTGA