ViewGene
Locus Name:
GeneID:
Location:

GeneID:3787
TrivialName: PA14_05430
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_05430
PAO1 Ortholog Locus:PA0417
Sequence Length:612
Protein Length:203
Start: 478700
Stop: 479311
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03806.1|AE004479_1 (AE004479) probable chemotaxis protein [Pseudomonas aeruginosa PAO1]
Identities = 203/203 (100%), Positives = 203/203 (100%)
Sequence:
ATGCTCGCCATCTTCCTCGCCGCCTTGCTGTTCGGTTTCGCCTTCAATGTTTCTCCTGGCGCGGTGTTCAGC
GAAACGCTGCGCCGTGGTTTGACCGGCGGCTTCCGCCCGGCGTTGCTGGTGCAACTGGGGTCGCTGATCGGC
GATGCCGTCTGGGCCCTGCTCGGGCTCACCGGGCTGGCGCTGCTGCTGGGCTACGAACAGGTGCGGATTCCC
CTGACCCTGGCCTGTGCCGCCTACCTGGCCTGGCTAGGCGTGCAAGGCTTGCGCGACGCCTGGAGTCCGCCG
CTGGCGGCGGAGGATGCCGGCGAGCAGGGGCGCAACGCCTTCGGCGCCGGCGCGGCGATCTCCCTGTCCAAC
CCGAAGAACGTGGTCTATTGGGGCGCCCTCGGCAGCGCCCTGGCGGGGATCGTCGACGGCACGCCGAACCAG
GCGCAGTCGCTGGTGTTCTTCGCCGGTTTCATGCTCTCGTCGCTGATCTGGTGCTTTTGCTGCGCGGCGCTG
GTGGACTGGCTGCGGCGCAACACCTCGCTGTTCTGGCACCGCGTCAGCTACGCCGGTTGCGGCGTGCTCCTG
CTCGGCCTGGCGGGACTGGCGCTGCGCGGGCTGTAG
Translation:
MLAIFLAALLFGFAFNVSPGAVFSETLRRGLTGGFRPALLVQLGSLIGDAVWALLGLTGLALLLGYEQVRIP
LTLACAAYLAWLGVQGLRDAWSPPLAAEDAGEQGRNAFGAGAAISLSNPKNVVYWGALGSALAGIVDGTPNQ
AQSLVFFAGFMLSSLIWCFCCAALVDWLRRNTSLFWHRVSYAGCGVLLLGLAGLALRGL*
AnnotationID:3794GeneID:3787
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 08:08:26
Gene Name:
Confidence Code:3
GeneProduct:putative chemotaxis protein
Cell Localization:()
Synonyms:chpE
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(10) Chemotaxis
Alternate Gene Product Name:putative efflux protein
Functional Category Confidence Code:5
COGs:pfam01810,COG1280
Secondary Functional Category(ies):protein secretion/export apparatus
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam01810, LysE, LysE type translocator. 
CD-Length = 191 residues,  99.0% aligned
Score =  118 bits (298), Expect = 4e-28
Identities = 70/191 (36%), Positives = 98/191 (51%), Gaps = 4/191 (2%)

COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  98.6% aligned
Score = 78.4 bits (193), Expect = 5e-16
Identities = 64/206 (31%), Positives = 83/206 (40%), Gaps = 5/206 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7577




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24719




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33743




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3787_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3787
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6007
                           PA0417_tr
                           translation of PA0417
                           203
                           99.99
                           99.99
                           0
                           1050.0
     

     
     
167585
                           gb|AAG03806.1|AE004479_1
                           (AE004479) probable chemotaxis protein [Pseudomonas aeruginosa PAO1]
                           203
                           99.99
                           99.99
                           0
                           1050.0
     

     
     
167586
                           gb|AAC23935.1|
                           (U79580) ChpE [Pseudomonas aeruginosa]
                           203
                           99.99
                           99.99
                           0
                           1050.0
     

     






      

          
GC ORFID: 46789How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0417Glimmer Score: 

          
Start: 6280042Stop: 6280653

          
Length: 612


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0417 translation of PA0417Homolog Bit Score 409.0

          
Other Homologs:  t_PA0417 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGCCATCTTCCTCGCCGCCTTGCTGTTCGGTTTCGCCTTCAATGTTTCTCCTGGCGCGGTGTTCAGC 
GAAACGCTGCGCCGTGGTTTGACCGGCGGCTTCCGCCCGGCGTTGCTGGTGCAACTGGGGTCGCTGATCGGC 
GATGCCGTCTGGGCCCTGCTCGGGCTCACCGGGCTGGCGCTGCTGCTGGGCTACGAACAGGTGCGGATTCCC 
CTGACCCTGGCCTGTGCCGCCTACCTGGCCTGGCTAGGCGTGCAAGGCTTGCGCGACGCCTGGAGTCCGCCG 
CTGGCGGCGGAGGATGCCGGCGAGCAGGGGCGCAACGCCTTCGGCGCCGGCGCGGCGATCTCCCTGTCCAAC 
CCGAAGAACGTGGTCTATTGGGGCGCCCTCGGCAGCGCCCTGGCGGGGATCGTCGACGGCACGCCGAACCAG 
GCGCAGTCGCTGGTGTTCTTCGCCGGTTTCATGCTCTCGTCGCTGATCTGGTGCTTTTGCTGCGCGGCGCTG 
GTGGACTGGCTGCGGCGCAACACCTCGCTGTTCTGGCACCGCGTCAGCTACGCCGGTTGCGGCGTGCTCCTG 
CTCGGCCTGGCGGGACTGGCGCTGCGCGGGCTGTAG