ViewGene
Locus Name:
GeneID:
Location:

GeneID:3786
TrivialName: PA14_70510
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_70510
PAO1 Ortholog Locus:PA5341
Sequence Length:621
Protein Length:206
Start: 6283110
Stop: 6282490
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08726.1|AE004946_10 (AE004946) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 206/206 (100%), Positives = 206/206 (100%)
Sequence:
ATGTTCGCCGCGTTCGTCCTTGTCGCCAGTACCCATTTCGCCGCCCTGCTGTCGCCGGGGCCGGACTTCTTC
CTGTTGGTGCGCGCCGCCCTGCTGCGCGGCCGGCGCCAGGCCGACGGGGTGGCCGCCGGCATCGCCCTGGCC
AACCTCCTGAGCATGCTGCTGGTGCTCGGCCTGCTGGCCAGCGTGCCGGACTCGGCGCACAGCGCCTTGCGC
TGGCTGCAGGCGCTCGGCGGACTGTACTTCCTCTGGCTGGCGGGCCAGGCGCTGCTTGCGCAGAGGCGACTG
GAAATGCCGGCGCAGCGCGACGTCCCGTCCCGCGGCGGCTATCTGCGCGGGCTGCGCGACGGCCTGCTGGCG
AGCAGCCTGAATCCCAAGCTGCCGATCTTCTATGCGGGGCTGTTCGGCGTGCTGGCGCGCTTCAGCCTGCCG
GGCTGGGCGCTGGCCCTGTGCCTGGCGTGGATGAGCCTGGCGGTGCTGTGCTGGGACATGGCGCTGGTGCGC
CTGCTGGACAGGCCGCGCTGGCGCGGCTGGTTGCAACGGCGGGTAGGTGCGCTGGACCGGCTGTGCGGCGTC
CTGCTGCTGGCGCTGGGCGGCTGGCTGGTGCTGGCCGCCCTCTGA
Translation:
MFAAFVLVASTHFAALLSPGPDFFLLVRAALLRGRRQADGVAAGIALANLLSMLLVLGLLASVPDSAHSALR
WLQALGGLYFLWLAGQALLAQRRLEMPAQRDVPSRGGYLRGLRDGLLASSLNPKLPIFYAGLFGVLARFSLP
GWALALCLAWMSLAVLCWDMALVRLLDRPRWRGWLQRRVGALDRLCGVLLLALGGWLVLAAL*
AnnotationID:3793GeneID:3786
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 19:07:30
Gene Name:
Confidence Code:3
GeneProduct:putative threonine efflux protein
Cell Localization:()
Synonyms:PA5341
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1280
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  99.5% aligned
Score = 79.9 bits (197), Expect = 2e-16
Identities = 56/208 (26%), Positives = 87/208 (41%), Gaps = 3/208 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7575




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24717




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34763




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3786_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3786
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6006
                           PA5341_tr
                           translation of PA5341
                           206
                           99.99
                           99.99
                           0
                           1050.0
     

     
     
167584
                           gb|AAG08726.1|AE004946_10
                           (AE004946) hypothetical protein PA5341 [Pseudomonas aeruginosa PAO1]
                           206
                           99.99
                           99.99
                           0
                           1050.0
     

     






      

          
GC ORFID: 46788How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5341Glimmer Score: 

          
Start: 5546799Stop: 5546179

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5341 translation of PA5341Homolog Bit Score 409.0

          
Other Homologs:  t_PA5341 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTTCGCCGCGTTCGTCCTTGTCGCCAGTACCCATTTCGCCGCCCTGCTGTCGCCGGGGCCGGACTTCTTC 
CTGTTGGTGCGCGCCGCCCTGCTGCGCGGCCGGCGCCAGGCCGACGGGGTGGCCGCCGGCATCGCCCTGGCC 
AACCTCCTGAGCATGCTGCTGGTGCTCGGCCTGCTGGCCAGCGTGCCGGACTCGGCGCACAGCGCCTTGCGC 
TGGCTGCAGGCGCTCGGCGGACTGTACTTCCTCTGGCTGGCGGGCCAGGCGCTGCTTGCGCAGAGGCGACTG 
GAAATGCCGGCGCAGCGCGACGTCCCGTCCCGCGGCGGCTATCTGCGCGGGCTGCGCGACGGCCTGCTGGCG 
AGCAGCCTGAATCCCAAGCTGCCGATCTTCTATGCGGGGCTGTTCGGCGTGCTGGCGCGCTTCAGCCTGCCG 
GGCTGGGCGCTGGCCCTGTGCCTGGCGTGGATGAGCCTGGCGGTGCTGTGCTGGGACATGGCGCTGGTGCGC 
CTGCTGGACAGGCCGCGCTGGCGCGGCTGGTTGCAACGGCGGGTAGGTGCGCTGGACCGGCTGTGCGGCGTC 
CTGCTGCTGGCGCTGGGCGGCTGGCTGGTGCTGGCCGCCCTCTGA