ViewGene

Locus Name:
GeneID:
Location:

GeneID:3785
TrivialName: PA14_69310
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69310
PAO1 Ortholog Locus:PA5249
Sequence Length:630
Protein Length:209
Start: 6183245
Stop: 6182616
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08634.1|AE004937_6 (AE004937) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 209/209 (100%), Positives = 209/209 (100%)
Sequence:
ATGCTCGTCAGTACCTGGTTCGCCTTCTTTCTCGCCTGCTGGGCCATCAGCCTGTCGCCGGGCGCCGGAGCC
ATCGCCTCGATGTCCTGCGGGTTGCAGTACGGCTTTGCGCGAGGCTACTGGAACGCGCTGGGCCTGCAGATC
GGCCTGGCCCTGCAGATCGCCATCGTCGCCGCCGGCGTCGGTGCGTTGCTGGCGACCTCGGCACTGGCTTTC
AGCCTGATCAAGTGGTTCGGCGTGGCCTACCTGGTGTACCTGGCGGTGCGCCAGTGGCAGGCGCCGCCACAG
GCCTTGAGCACCGATGGCGAACGGCCTCTGGGGCGACCGTTGACCCTGGTGCTGCGTGGTTTCCTGGTCAAC
GCCAGCAATCCCAAGGCGGTGATCTTCATGCTCGCGGTGCTGCCGCAGTTCATCGACCCGCACCAGCCGCTG
CTGGCGCAGTACCTGATCATGGGCGGCACCATGATCGTCGTCGACCTGATCGTCATGGCCGGCTACACCGGA
CTGGCTGCGCGCGTGCTACGGGTACTGCGTTCGCCGCGCCAGCAGAAGCTGGTGAACCGTACCTTCGCCAGC
CTGTTCGTCGGCGCCGCGGGGCTGCTGGCGACGGTACGCCGAGCGCCGCTCTGA
Translation:
MLVSTWFAFFLACWAISLSPGAGAIASMSCGLQYGFARGYWNALGLQIGLALQIAIVAAGVGALLATSALAF
SLIKWFGVAYLVYLAVRQWQAPPQALSTDGERPLGRPLTLVLRGFLVNASNPKAVIFMLAVLPQFIDPHQPL
LAQYLIMGGTMIVVDLIVMAGYTGLAARVLRVLRSPRQQKLVNRTFASLFVGAAGLLATVRRAPL*
AnnotationID:3792GeneID:3785
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 07:07:26
Gene Name:
Confidence Code:3
GeneProduct:putative LysE family efflux protein
Cell Localization:()
Synonyms:PA5249
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1280,pfam01810
Secondary Functional Category(ies):amino acid transport and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO53694.1| (AE016856) homoserine/homoserine lactone efflux protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 210

 Score =  305 bits (780), Expect = 2e-82
 Identities = 148/207 (71%), Positives = 175/207 (84%), Gaps = 1/207 (0%)

>gb|AAN65831.1|AE016211_9 (AE016774) transporter, LysE family [Pseudomonas putida KT2440]
          Length = 210

 Score =  302 bits (774), Expect = 8e-82
 Identities = 147/210 (70%), Positives = 176/210 (83%), Gaps = 1/210 (0%)

>emb|CAE39608.1| (BX640436) LysE family efflux protein [Bordetella parapertussis]
          Length = 209

 Score =  221 bits (562), Expect = 3e-57
 Identities = 112/207 (54%), Positives = 143/207 (69%), Gaps = 1/207 (0%)

Structural Features:
COG1280, RhtB, Putative threonine efflux protein [Amino acid transport and metabolism]
CD-Length = 208 residues, 100.0% aligned
Score =  120 bits (303), Expect = 1e-28
Identities = 80/208 (38%), Positives = 116/208 (55%), Gaps = 2/208 (0%)

pfam01810, LysE, LysE type translocator. 
CD-Length = 191 residues,  98.4% aligned
Score = 94.5 bits (235), Expect = 7e-21
Identities = 53/189 (28%), Positives = 86/189 (45%), Gaps = 1/189 (0%)
Genomic Context:
Comment:
ReferenceID:7573
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24715
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34832
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3785_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3785

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6005 PA5249_tr translation of PA5249 209 99.99 99.99 0 1051.0
167560 gb|AAG08634.1|AE004937_6 (AE004937) hypothetical protein PA5249 [Pseudomonas aeruginosa PAO1] 209 99.99 99.99 0 1051.0
167561 gb|AAO53694.1| (AE016856) homoserine/homoserine lactone efflux protein [Pseudomonas syringae pv. tomato str. DC3000] 210 70.47 83.33 1 780.0
167562 gb|AAN65831.1|AE016211_9 (AE016774) transporter, LysE family [Pseudomonas putida KT2440] 210 70.00 83.80 1 776.0
167565 emb|CAE40550.1| (BX640411) LysE family efflux protein [Bordetella pertussis] [Bordetella pertussis Tohama I] 210 53.33 68.09 2 559.0
GC ORFID: 46787How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5249Glimmer Score:
Start: 5446932Stop: 5446303
Length: 630
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5249 translation of PA5249Homolog Bit Score 409.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene4076 (ORF: BLASTX 307.0), t_PA5249 (ORF: GLIMMER)
GC ORF Sequence
ATGCTCGTCAGTACCTGGTTCGCCTTCTTTCTCGCCTGCTGGGCCATCAGCCTGTCGCCGGGCGCCGGAGCC
ATCGCCTCGATGTCCTGCGGGTTGCAGTACGGCTTTGCGCGAGGCTACTGGAACGCGCTGGGCCTGCAGATC
GGCCTGGCCCTGCAGATCGCCATCGTCGCCGCCGGCGTCGGTGCGTTGCTGGCGACCTCGGCACTGGCTTTC
AGCCTGATCAAGTGGTTCGGCGTGGCCTACCTGGTGTACCTGGCGGTGCGCCAGTGGCAGGCGCCGCCACAG
GCCTTGAGCACCGATGGCGAACGGCCTCTGGGGCGACCGTTGACCCTGGTGCTGCGTGGTTTCCTGGTCAAC
GCCAGCAATCCCAAGGCGGTGATCTTCATGCTCGCGGTGCTGCCGCAGTTCATCGACCCGCACCAGCCGCTG
CTGGCGCAGTACCTGATCATGGGCGGCACCATGATCGTCGTCGACCTGATCGTCATGGCCGGCTACACCGGA
CTGGCTGCGCGCGTGCTACGGGTACTGCGTTCGCCGCGCCAGCAGAAGCTGGTGAACCGTACCTTCGCCAGC
CTGTTCGTCGGCGCCGCGGGGCTGCTGGCGACGGTACGCCGAGCGCCGCTCTGA