ViewGene
Locus Name:
GeneID:
Location:

GeneID:3784
TrivialName: PA14_64640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_64640
PAO1 Ortholog Locus:PA4890
Sequence Length:630
Protein Length:209
Start: 5757762
Stop: 5758391
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08275.1|AE004902_3 (AE004902) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 208/208 (100%), Positives = 208/208 (100%)
Sequence:
ATGTCCTCACCCCGCGCCGAACAGAAACAGCAGACCCGCCACGCGCTGATGAGCGCCGCGCGCCACCTGATG
GAAAGCGGGCGCGGCTTCGGCAGCCTCAGCCTGCGCGAAGTGACGCGCGCCGCCGGCATCGTCCCGGCCGGC
TTCTATCGGCACTTCAGCGACATGGACCAGCTCGGCCTGGCGCTGGTCGCCGAGGTCGACGAGACCTTCCGC
GCCACCCTGCGCGCGGTGCGCCGCAACGAGTTCGAACTGGGCGGGCTGATCGACGCCTCGGTGCGCATCTTC
CTCGACGCGGTCGGCGCCAACCGCTCGCAGTTCCTCTTCCTCGCCCGCGAGCAATACGGCGGCTCGTTGCCG
ATCCGCCAGGCCATCGCCAGCCTGCGCCAGCGCATCACCGACGACCTGGCCGCCGACCTGGCGCTGCTGAAC
AAGATGCCGCATCTCGACGGCGCGGCCCTCGACGTGTTCGCCGACCTGGTGGTGAAGACCGTCTTCGCCACC
CTTCCGGAGCTGATCGACCCACCCGCCGCCGACCTGCCGCCGCACCTGATGCCGGCCGCGAAGATCACCCAC
CAGCTGCGTTTCATCATGATCGGCGGCAAGCACTGGCACGGCCTGCCCGACTGA
Translation:
MSSPRAEQKQQTRHALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFR
ATLRAVRRNEFELGGLIDASVRIFLDAVGANRSQFLFLAREQYGGSLPIRQAIASLRQRITDDLAADLALLN
KMPHLDGAALDVFADLVVKTVFATLPELIDPPAADLPPHLMPAAKITHQLRFIMIGGKHWHGLPD*
AnnotationID:3791GeneID:3784
AnnotatorUID: diggins
Modification Date/Time: 2005-03-11 12:12:11
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, TetR family
Cell Localization:()
Synonyms:PA4890
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58336.1| (AE016873) transcriptional regulator, TetR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 210

 Score =  291 bits (745), Expect = 2e-78
 Identities = 148/204 (72%), Positives = 164/204 (80%)

>gb|AAN70428.1|AE016684_7 (AE016792) transcriptional regulator, TetR family [Pseudomonas
           putida KT2440]
          Length = 211

 Score =  288 bits (737), Expect = 1e-77
 Identities = 148/204 (72%), Positives = 164/204 (80%)








 
Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 44.6 bits (106), Expect = 8e-06
Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 1/48 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7571




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24713




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35141




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3784_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3784
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6004
                           PA4890_tr
                           translation of PA4890
                           209
                           99.52
                           99.52
                           0
                           1049.0
     

     
     
167557
                           gb|AAG08275.1|AE004902_3
                           (AE004902) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           209
                           99.52
                           99.52
                           0
                           1049.0
     

     
     
167558
                           gb|AAO58336.1|
                           (AE016873) transcriptional regulator, TetR family [Pseudomonas syringae pv. tomato str. DC3000]
                           211
                           70.14
                           77.72
                           3
                           739.0
     

     
     
167559
                           gb|AAN70428.1|AE016684_7
                           (AE016792) transcriptional regulator, TetR family [Pseudomonas putida KT2440]
                           212
                           69.81
                           77.83
                           4
                           733.0
     

     






      

          
GC ORFID: 46786How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4890Glimmer Score: 

          
Start: 5021443Stop: 5022072

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4890 translation of PA4890Homolog Bit Score 409.0

          
Other Homologs:  psyr_15may02_Scaffold4_revised_gene5821 (ORF: BLASTX 292.0), t_PA4890 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCTCACCCCGCGCCGAACAGAAACAGCAGACCCGCCACGCGCTGATGAGCGCCGCGCGCCACCTGATG 
GAAAGCGGGCGCGGCTTCGGCAGCCTCAGCCTGCGCGAAGTGACGCGCGCCGCCGGCATCGTCCCGGCCGGC 
TTCTATCGGCACTTCAGCGACATGGACCAGCTCGGCCTGGCGCTGGTCGCCGAGGTCGACGAGACCTTCCGC 
GCCACCCTGCGCGCGGTGCGCCGCAACGAGTTCGAACTGGGCGGGCTGATCGACGCCTCGGTGCGCATCTTC 
CTCGACGCGGTCGGCGCCAACCGCTCGCAGTTCCTCTTCCTCGCCCGCGAGCAATACGGCGGCTCGTTGCCG 
ATCCGCCAGGCCATCGCCAGCCTGCGCCAGCGCATCACCGACGACCTGGCCGCCGACCTGGCGCTGCTGAAC 
AAGATGCCGCATCTCGACGGCGCGGCCCTCGACGTGTTCGCCGACCTGGTGGTGAAGACCGTCTTCGCCACC 
CTTCCGGAGCTGATCGACCCACCCGCCGCCGACCTGCCGCCGCACCTGATGCCGGCCGCGAAGATCACCCAC 
CAGCTGCGTTTCATCATGATCGGCGGCAAGCACTGGCACGGCCTGCCCGACTGA