ViewGene
Locus Name:
GeneID:
Location:

GeneID:3783
TrivialName: PA14_57570
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_57570
PAO1 Ortholog Locus:PA4431
Sequence Length:594
Protein Length:197
Start: 5128417
Stop: 5127824
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07819.1|AE004857_10 (AE004857) probable iron-sulfur protein [Pseudomonas aeruginosa PAO1]
Identities = 197/197 (100%), Positives = 197/197 (100%)
Sequence:
ATGAGTAATGACGGCGTGAATGCAGGCCGGCGTCGCTTCCTCGTCGCGGCCACCTCTGTGGTTGGCGCGGCG
GGAGCGGTGGGTGCTGCGGTCCCGTTCGTAGGGTCATGGTTCCCCAGTGCCAAAGCCAAGGCTGCTGGCGCG
CCGGTGCAGGTGAACGTGGGCAAGATCGATCCAGGTCAGCAGATCATCGCTGAATGGCGCGGCAAGCCTGTA
TTCATCGTGCACCGCACGAAGGAGATGCTGGACGCCCTGCCGAGCCTCGAAGGACAACTGGCCGACCCGGAC
TCCAAGGCCTCGGAGCAGCCGGAGTACGTCGATCCCAAGCTTCGCTCGATCAAGCCGGAACTGGCGGTGATC
GTCGGCATCTGCACCCACCTGGGCTGCTCGCCGACCTTCCGTCCCGAAGTCGCCCCCGCCGACCTCGGTCCG
GACTGGAAGGGTGGCTACTTCTGCCCTTGCCACGGCTCCCACTACGACCTCGCCGGTCGTGTCTACAAAGGC
CAGCCAGCGCCGCTGAACCTGCCGATTCCGCCTTATACGTTCGATGCTGACGACGTCATCACCATCGGCGTG
GACCAGGAGAAAGCCTGA
Translation:
MSNDGVNAGRRRFLVAATSVVGAAGAVGAAVPFVGSWFPSAKAKAAGAPVQVNVGKIDPGQQIIAEWRGKPV
FIVHRTKEMLDALPSLEGQLADPDSKASEQPEYVDPKLRSIKPELAVIVGICTHLGCSPTFRPEVAPADLGP
DWKGGYFCPCHGSHYDLAGRVYKGQPAPLNLPIPPYTFDADDVITIGVDQEKA*
AnnotationID:3790GeneID:3783
AnnotatorUID: diggins
Modification Date/Time: 2005-05-02 19:07:09
Gene Name:
Confidence Code:3
GeneProduct:putative cytochrome c reductase, iron-sulfur subun
Cell Localization:()
Synonyms:PA4431
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0723,KOG1671
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN66941.1|AE016322_8 (AE016778) ubiquinol--cytochrome c reductase, iron-sulfur subunit
           [Pseudomonas putida KT2440]
          Length = 197

 Score =  339 bits (870), Expect = 5e-93
 Identities = 154/197 (78%), Positives = 180/197 (91%)

>emb|CAB83684.1| (AL162753) ubiquinol-cytochrome c reductase iron-sulfur subunit
           [Neisseria meningitidis Z2491]
          Length = 193

 Score =  256 bits (653), Expect = 7e-68
 Identities = 116/193 (60%), Positives = 144/193 (74%)

>gb|AAN53686.1|AE015508_2 (AE015508) ubiquinol-cytochrome c reductase, iron-sulfur subunit
           [Shewanella oneidensis MR-1]
          Length = 196

 Score =  238 bits (608), Expect = 1e-62
 Identities = 115/194 (59%), Positives = 145/194 (74%), Gaps = 1/194 (0%)







 
Structural Features:
COG0723, QcrA, Rieske Fe-S protein [Energy production and conversion]
CD-Length = 177 residues,  96.0% aligned
Score =  137 bits (347), Expect = 1e-33
Identities = 71/197 (36%), Positives = 92/197 (46%), Gaps = 28/197 (14%)

KOG1671, Ubiquinol cytochrome c reductase, subunit RIP1 
[Energy production and conversion]
CD-Length = 210 residues,  81.4% aligned
Score =  122 bits (306), Expect = 8e-29
Identities = 72/192 (37%), Positives = 101/192 (52%), Gaps = 22/192 (11%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7569




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24711




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31470




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3783_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3783
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6003
                           PA4431_tr
                           translation of PA4431
                           197
                           99.99
                           99.99
                           0
                           1050.0
     

     
     
167518
                           gb|AAG07819.1|AE004857_10
                           (AE004857) probable iron-sulfur protein [Pseudomonas aeruginosa PAO1]
                           197
                           99.99
                           99.99
                           0
                           1050.0
     

     
     
167519
                           gb|AAN66941.1|AE016322_8
                           (AE016778) ubiquinol--cytochrome c reductase, iron-sulfur subunit [Pseudomonas putida KT2440]
                           197
                           78.17
                           91.37
                           0
                           870.0
     

     
     
167520
                           emb|CAB83684.1|
                           (AL162753) ubiquinol-cytochrome c reductase iron-sulfur subunit [Neisseria meningitidis Z2491]
                           197
                           58.88
                           73.09
                           4
                           653.0
     

     
     
167521
                           gb|AAF42373.1|
                           (AE002555) ubiquinol--cytochrome c reductase, iron-sulfur subunit [Neisseria meningitidis MC58]
                           197
                           58.88
                           73.09
                           4
                           653.0
     

     






      

          
GC ORFID: 46785How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4431Glimmer Score: 

          
Start: 4392096Stop: 4391503

          
Length: 594


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4431 translation of PA4431Homolog Bit Score 409.0

          
Other Homologs:  t_PA4431 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTAATGACGGCGTGAATGCAGGCCGGCGTCGCTTCCTCGTCGCGGCCACCTCTGTGGTTGGCGCGGCG 
GGAGCGGTGGGTGCTGCGGTCCCGTTCGTAGGGTCATGGTTCCCCAGTGCCAAAGCCAAGGCTGCTGGCGCG 
CCGGTGCAGGTGAACGTGGGCAAGATCGATCCAGGTCAGCAGATCATCGCTGAATGGCGCGGCAAGCCTGTA 
TTCATCGTGCACCGCACGAAGGAGATGCTGGACGCCCTGCCGAGCCTCGAAGGACAACTGGCCGACCCGGAC 
TCCAAGGCCTCGGAGCAGCCGGAGTACGTCGATCCCAAGCTTCGCTCGATCAAGCCGGAACTGGCGGTGATC 
GTCGGCATCTGCACCCACCTGGGCTGCTCGCCGACCTTCCGTCCCGAAGTCGCCCCCGCCGACCTCGGTCCG 
GACTGGAAGGGTGGCTACTTCTGCCCTTGCCACGGCTCCCACTACGACCTCGCCGGTCGTGTCTACAAAGGC 
CAGCCAGCGCCGCTGAACCTGCCGATTCCGCCTTATACGTTCGATGCTGACGACGTCATCACCATCGGCGTG 
GACCAGGAGAAAGCCTGA