ViewGene

Locus Name:
GeneID:
Location:

GeneID:3782
TrivialName: PA14_16160
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16160
PAO1 Ortholog Locus:PA3730
Sequence Length:642
Protein Length:213
Start: 1375985
Stop: 1376626
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07117.1|AE004792_2 (AE004792) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 212/213 (99%), Positives = 212/213 (99%)
Sequence:
ATGGAAGGTTTCCTGCAGACGGCGCTGTCGTTTCCGACCGTGCTGTTCAGCTTTCTTCTGATCCTCGCGATC
ATCTACTGGGGCATCGTCGCCCTGGGCATGGTCGAGATCGATGTGCTCGATCTCGACGCCGAGTCGGTCGTC
GATGGCGCCGGCCAGGCCGAAGGCCTCGCCGCGCTGCTGGCGAAGCTGAAACTCAACGGCGTACCGGTCACC
CTGGTGCTGACCCTGCTGTCCTTCTTCGCCTGGTTCCTCTGTTACTTCGTCCAGTTGTGGCTGCTCAGCGCA
TTGTCGCTCGGCTGGCTGCGCTACCCGTTGGGCGCCGTGGTGGCGGTGGGCGCGCTGTTCCTGGCGGCGCCG
CTGGCGGCCACGCTGTGCCGGCCGTTGCGGCCGCTGTTCCGCAAGCTGGAAAGCACCAGCAGCAAGTCGGTG
CTGGGCCAGGTCGCGGTGGTGCGCAGCGGGCGGGTCACCCTGCAACATGGCGAGGCGTTGCTGGAAGACGGC
GGCGCCGGGCTGATCCTGAAAGTTCGTGCGGAAGAAAACAAAGGCTTCAAGCGCGGCGATCGCGTCGTGCTG
CTGGAGTACCTGGAGGCGGAGCACGCCTATCGGGTCGTTACCGAGGAAGAGTTCCGCGGTATCTGA
Translation:
MEGFLQTALSFPTVLFSFLLILAIIYWGIVALGMVEIDVLDLDAESVVDGAGQAEGLAALLAKLKLNGVPVT
LVLTLLSFFAWFLCYFVQLWLLSALSLGWLRYPLGAVVAVGALFLAAPLAATLCRPLRPLFRKLESTSSKSV
LGQVAVVRSGRVTLQHGEALLEDGGAGLILKVRAEENKGFKRGDRVVLLEYLEAEHAYRVVTEEEFRGI*
AnnotationID:3789GeneID:3782
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 08:08:00
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA3730
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
CDD Search: No hits above 0.01 threshold.
Genomic Context:
Comment:
ReferenceID:7567
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24709
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3782

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
6002 PA3730_tr translation of PA3730 213 99.53 99.53 0 1052.0
167517 gb|AAG07117.1|AE004792_2 (AE004792) hypothetical protein PA3730 [Pseudomonas aeruginosa PAO1] 213 99.53 99.53 0 1052.0
GC ORFID: 46784How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3730Glimmer Score:
Start: 3577952Stop: 3577311
Length: 642
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3730 translation of PA3730Homolog Bit Score 409.0
Other Homologs: t_PA3730 (ORF: GLIMMER)
GC ORF Sequence
ATGGAAGGTTTCCTGCAGACGGCGCTGTCGTTTCCGACCGTGCTGTTCAGCTTTCTTCTGATCCTCGCGATC
ATCTACTGGGGCATCGTCGCCCTGGGCATGGTCGAGATCGATGTGCTCGATCTCGACGCCGAGTCGGTCGTC
GATGGCGCCGGCCAGGCCGAAGGCCTCGCCGCGCTGCTGGCGAAGCTGAAACTCAACGGCGTACCGGTCACC
CTGGTGCTGACCCTGCTGTCCTTCTTCGCCTGGTTCCTCTGTTACTTCGTCCAGTTGTGGCTGCTCAGCGCA
TTGTCGCTCGGCTGGCTGCGCTACCCGTTGGGCGCCGTGGTGGCGGTGGGCGCGCTGTTCCTGGCGGCGCCG
CTGGCGGCCACGCTGTGCCGGCCGTTGCGGCCGCTGTTCCGCAAGCTGGAAAGCACCAGCAGCAAGTCGGTG
CTGGGCCAGGTCGCGGTGGTGCGCAGCGGGCGGGTCACCCTGCAACATGGCGAGGCGTTGCTGGAAGACGGC
GGCGCCGGGCTGATCCTGAAAGTTCGTGCGGAAGAAAACAAAGGCTTCAAGCGCGGCGATCGCGTCGTGCTG
CTGGAGTACCTGGAGGCGGAGCACGCCTATCGGGTCGTTACCGAGGAAGAGTTCCGCGGTATCTGA