ViewGene
Locus Name:
GeneID:
Location:

GeneID:3781
TrivialName: PA14_24890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_24890
PAO1 Ortholog Locus:PA3030
Sequence Length:597
Protein Length:198
Start: 2175268
Stop: 2174672
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06418.1|AE004728_4 (AE004728) probable molybdopterin-guanine dinucleotide biosynthesis protein MobA [Pseudomonas aeruginosa PAO1]
Identities = 197/198 (99%), Positives = 198/198 (100%)
Sequence:
ATGCCCGATAGCGCCCTGCCCCCCTGCTCCATCCTTCTCCTGGCGGGAGGCCGCGGCCAGCGCATGGGCGGT
CGCGACAAGGGCCTGATCGAGTGGCAGGGCCTGCCCCTGATCGCCCACCTGCATCGCCTGGTGCGCCCGCTC
ACCGATGACCTGATCGTCTCCTGCAACCGCAACCAGGAACGCTATGCGGCCTATGCCGACCGCCTGGTGAGC
GACGACAGCCGAGACTTCCCCGGCCCGCTCGCCGGCATCCGCGCCGGCCTGGCGGTGGCCCGGCATCCCTGG
CTGCTGGTGCTGCCCTGCGACGCGCCGCGCATCGACCGCGCCTTGCTGGAAACCCTGCTGCAGGCCGCCGGC
CGCACACCGGCGCGCCCCTGGATGCTGCGCTGCGGCGGCCAGTGGGAACCGCTGTTCAGCCTGATCCCGACG
CACCTGGCCGAAGAGATAGAACACGCCTGGCGCCAGGGCGACCGTAGCCCACGCCACGTCCTGTTGCCGCTT
GGCGCGGAGGCCATCGAGCTGGCCGCGGGCGATCCGCGGCTGGCCAACCTTAACACCCCCGAGCTGTTGGCT
AATCACCGCGAACTGAAGTAA
Translation:
MPDSALPPCSILLLAGGRGQRMGGRDKGLIEWQGLPLIAHLHRLVRPLTDDLIVSCNRNQERYAAYADRLVS
DDSRDFPGPLAGIRAGLAVARHPWLLVLPCDAPRIDRALLETLLQAAGRTPARPWMLRCGGQWEPLFSLIPT
HLAEEIEHAWRQGDRSPRHVLLPLGAEAIELAAGDPRLANLNTPELLANHRELK*
AnnotationID:3788GeneID:3781
AnnotatorUID: diggins
Modification Date/Time: 2005-04-12 06:06:10
Gene Name:
Confidence Code:3
GeneProduct:putative molybdopterin-guanine dinucleotide biosynthesis protein A
Cell Localization:()
Synonyms:mobA
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(4) Biosynthesis of cofactors, prosthetic groups and carriers
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0746
Secondary Functional Category(ies):coenzyme metabolism
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55862.1| (AE016864) molybdopterin-guanine dinucleotide biosynthesis protein
           A [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 201

 Score =  253 bits (646), Expect = 5e-67
 Identities = 126/193 (65%), Positives = 140/193 (72%)

>gb|AAN69059.1|AE016538_8 (AE016786) molybdopterin-guanine dinucleotide biosynthesis protein
           A [Pseudomonas putida KT2440]
          Length = 191

 Score =  236 bits (603), Expect = 5e-62
 Identities = 117/193 (60%), Positives = 144/193 (74%), Gaps = 6/193 (3%)








 
Structural Features:
COG0746, MobA, Molybdopterin-guanine dinucleotide biosynthesis protein A 
[Coenzyme metabolism]
CD-Length = 192 residues,  98.4% aligned
Score =  160 bits (405), Expect = 1e-40
Identities = 78/192 (40%), Positives = 104/192 (54%), Gaps = 4/192 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7565




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24707




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36018




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3781_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3781
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6001
                           PA3030_tr
                           translation of PA3030
                           198
                           99.49
                           99.99
                           0
                           1050.0
     

     
     
167512
                           gb|AAG06418.1|AE004728_4
                           (AE004728) probable molybdopterin-guanine dinucleotide biosynthesis protein MobA [Pseudomonas aeruginosa PAO1]
                           198
                           99.49
                           99.99
                           0
                           1050.0
     

     
     
167513
                           gb|AAC15714.1|
                           (AF053982) putative molybdoterin-guanine dinucleotide biosynthesis protein A [Pseudomonas aeruginosa]
                           198
                           99.49
                           99.99
                           0
                           1050.0
     

     
     
167514
                           gb|AAO55862.1|
                           (AE016864) molybdopterin-guanine dinucleotide biosynthesis protein A [Pseudomonas syringae pv. tomato str. DC3000]
                           201
                           63.18
                           70.64
                           3
                           638.0
     

     
     
167515
                           gb|AAN69059.1|AE016538_8
                           (AE016786) molybdopterin-guanine dinucleotide biosynthesis protein A [Pseudomonas putida KT2440]
                           200
                           58.50
                           72.50
                           11
                           610.0
     

     






      

          
GC ORFID: 46783How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3030Glimmer Score: 

          
Start: 2778660Stop: 2779256

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA3030 translation of PA3030Homolog Bit Score 409.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene336 (ORF: BLASTX 260.0), t_PA3030 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCGATAGCGCCCTGCCCCCCTGCTCCATCCTTCTCCTGGCGGGAGGCCGCGGCCAGCGCATGGGCGGT 
CGCGACAAGGGCCTGATCGAGTGGCAGGGCCTGCCCCTGATCGCCCACCTGCATCGCCTGGTGCGCCCGCTC 
ACCGATGACCTGATCGTCTCCTGCAACCGCAACCAGGAACGCTATGCGGCCTATGCCGACCGCCTGGTGAGC 
GACGACAGCCGAGACTTCCCCGGCCCGCTCGCCGGCATCCGCGCCGGCCTGGCGGTGGCCCGGCATCCCTGG 
CTGCTGGTGCTGCCCTGCGACGCGCCGCGCATCGACCGCGCCTTGCTGGAAACCCTGCTGCAGGCCGCCGGC 
CGCACACCGGCGCGCCCCTGGATGCTGCGCTGCGGCGGCCAGTGGGAACCGCTGTTCAGCCTGATCCCGACG 
CACCTGGCCGAAGAGATAGAACACGCCTGGCGCCAGGGCGACCGTAGCCCACGCCACGTCCTGTTGCCGCTT 
GGCGCGGAGGCCATCGAGCTGGCCGCGGGCGATCCGCGGCTGGCCAACCTTAACACCCCCGAGCTGTTGGCT 
AATCACCGCGAACTGAAGTAA