ViewGene
Locus Name:
GeneID:
Location:

GeneID:3780
TrivialName: PA14_27840
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_27840
PAO1 Ortholog Locus:PA2807
Sequence Length:618
Protein Length:205
Start: 2412042
Stop: 2412659
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06195.1|AE004708_1 (AE004708) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/205 (98%), Positives = 203/205 (99%)
Sequence:
ATGCTCCCGACAGCCAGCCGGCAGGCGCAGCGACACAGGATAGGCGACATCAACCCGATGGAGATTCCCCGT
ATGTTTCCGCGCCGCCTGCTTCCCGCTTCCCTGATCGTCCTCGGCGTGCTTTTCGGTGCCAACGCCCAGGCT
TCGCCGGCCCACGGCCAGGCCTTCGGCAAGCCGGCCCAGGCCGCGCAGGCCAGCCGCAGCATCGAGGTGGTG
CTCGGCGACATGTACTTCAAGCCGCGGGCGATCGAGGTCAAGGCCGGCGAGACGGTCCGCTTCGTGCTGAAG
AACGAAGGCAAGCTGTTGCACGAGTTCAACCTGGGAGACGCGGCGATGCATGCCGAGCACCAGAAGGAGATG
CTGGAGATGCAGCAGTCCGGGATGCTCACCCCGACCGGCATGGCGTCGATGGACCATAGTCAGATGGGCCAC
GGCATGGCCGGCATGGACCATGGCCGGATGATGAAGCACGACGACCCCAACAGCGTGCTGGTCGAGCCGGGC
AAGAGCGCCGAGCTGACCTGGACCTTCGCCAAAGCCACCCGGCTGGAGTTCGCCTGCAACATCCCCGGCCAC
TACCAGGCCGGGATGGTCGGTCAACTGACCGTGCAGCCCTGA
Translation:
MLPTASRQAQRHRIGDINPMEIPRMFPRRLLPASLIVLGVLFGANAQASPAHGQAFGKPAQAAQASRSIEVV
LGDMYFKPRAIEVKAGETVRFVLKNEGKLLHEFNLGDAAMHAEHQKEMLEMQQSGMLTPTGMASMDHSQMGH
GMAGMDHGRMMKHDDPNSVLVEPGKSAELTWTFAKATRLEFACNIPGHYQAGMVGQLTVQP*
AnnotationID:3787GeneID:3780
AnnotatorUID: diggins
Modification Date/Time: 2005-06-10 20:08:40
Gene Name:
Confidence Code:3
GeneProduct:putative copper-binding protein
Cell Localization:()
Synonyms:PA2807
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4454
Secondary Functional Category(ies):adaptation, protection
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67772.1|AE016408_10 (AE016782) copper-binding protein, plastocyanin/azurin family
           [Pseudomonas putida KT2440]
          Length = 175

 Score =  182 bits (461), Expect = 1e-45
 Identities = 94/177 (53%), Positives = 121/177 (68%), Gaps = 3/177 (1%)

>emb|CAC38041.1| (AJ311972) copper-tolerance protein [Pseudomonas fluorescens]
          Length = 97

 Score =  150 bits (379), Expect = 5e-36
 Identities = 74/101 (73%), Positives = 83/101 (82%), Gaps = 7/101 (6%)








 
Structural Features:
COG4454, Uncharacterized copper-binding protein 
[Inorganic ion transport and metabolism]
CD-Length = 158 residues, 100.0% aligned
Score =  143 bits (362), Expect = 1e-35
Identities = 76/189 (40%), Positives = 94/189 (49%), Gaps = 36/189 (19%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7563




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24705




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36251




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3780_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3780
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
6000
                           PA2807_tr
                           translation of PA2807
                           205
                           98.53
                           99.02
                           0
                           1050.0
     

     
     
167509
                           gb|AAG06195.1|AE004708_1
                           (AE004708) hypothetical protein PA2807 [Pseudomonas aeruginosa PAO1]
                           205
                           98.53
                           99.02
                           0
                           1050.0
     

     
     
167510
                           gb|AAN67772.1|AE016408_10
                           (AE016782) copper-binding protein, plastocyanin/azurin family [Pseudomonas putida KT2440]
                           211
                           46.91
                           60.66
                           42
                           473.0
     

     
     
167511
                           emb|CAC38041.1|
                           (AJ311972) copper-tolerance protein [Pseudomonas fluorescens]
                           206
                           35.92
                           40.29
                           110
                           384.0
     

     






      

          
GC ORFID: 46782How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2807Glimmer Score: 

          
Start: 2541884Stop: 2541267

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2807 translation of PA2807Homolog Bit Score 409.0

          
Other Homologs:  t_PA2807 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCCCGACAGCCAGCCGGCAGGCGCAGCGACACAGGATAGGCGACATCAACCCGATGGAGATTCCCCGT 
ATGTTTCCGCGCCGCCTGCTTCCCGCTTCCCTGATCGTCCTCGGCGTGCTTTTCGGTGCCAACGCCCAGGCT 
TCGCCGGCCCACGGCCAGGCCTTCGGCAAGCCGGCCCAGGCCGCGCAGGCCAGCCGCAGCATCGAGGTGGTG 
CTCGGCGACATGTACTTCAAGCCGCGGGCGATCGAGGTCAAGGCCGGCGAGACGGTCCGCTTCGTGCTGAAG 
AACGAAGGCAAGCTGTTGCACGAGTTCAACCTGGGAGACGCGGCGATGCATGCCGAGCACCAGAAGGAGATG 
CTGGAGATGCAGCAGTCCGGGATGCTCACCCCGACCGGCATGGCGTCGATGGACCATAGTCAGATGGGCCAC 
GGCATGGCCGGCATGGACCATGGCCGGATGATGAAGCACGACGACCCCAACAGCGTGCTGGTCGAGCCGGGC 
AAGAGCGCCGAGCTGACCTGGACCTTCGCCAAAGCCACCCGGCTGGAGTTCGCCTGCAACATCCCCGGCCAC 
TACCAGGCCGGGATGGTCGGTCAACTGACCGTGCAGCCCTGA