ViewGene

Locus Name:
GeneID:
Location:

GeneID:3779
TrivialName: PA14_48800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48800
PAO1 Ortholog Locus:PA1198
Sequence Length:618
Protein Length:205
Start: 4338790
Stop: 4338173
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04587.1|AE004550_3 (AE004550) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/205 (100%), Positives = 205/205 (100%)
Sequence:
GTGCCCATGCTTAAACGCTTAGCACCCCTCGTGCCCATGAGTTTCGTTCTGCTGCTGGCCGCTTGCGCCAGC
CATTCGCCGGAGCCGCAGGTCGCCAAAGAGCCGACCGCAGCCAAGAGCAGCATCGACGTCGAACGCGACGCG
ATCGCTTGGCAGGATGTTGAGGACGAAGGGGCGGACAATTCATCGGCTGGTACGCCTGCGCTGGCGTCCAGC
ATCCTCGAGCGCGCTTTCGAACTGATCGGTACGCCGTACCGTTTCGGCGGTACGACGGCGAAAGGCTTCGAT
TGCAGCGGCTTCGTCGGCTACCTGTTCCGCGAGGAGGCCGGCATCAAGCTGCCGCGCTCCACCCGCGAACTC
ATCGATATGGACGTGCCGCTGGTCTCCAAGGACGAGTTGCAGCCGGGCGACCTGCTGTTCTTCAACAACCGT
GGCCGTGGCCGCGTCAGCCACGCCGGCATCTACATCGGCGATGGCCAGTTCATCCATTCCGCCAGCCGTCGC
GGCGGCGGGGTGCGGGTGGACAGCCTGGACTCCAGCTACTGGAGCCTGAGCTACATGGAAGCCAAGCGGGTG
CTCGAACCCGGCTACAAGGACGCCCTGACGAGCAAGCGCTAA
Translation:
MPMLKRLAPLVPMSFVLLLAACASHSPEPQVAKEPTAAKSSIDVERDAIAWQDVEDEGADNSSAGTPALASS
ILERAFELIGTPYRFGGTTAKGFDCSGFVGYLFREEAGIKLPRSTRELIDMDVPLVSKDELQPGDLLFFNNR
GRGRVSHAGIYIGDGQFIHSASRRGGGVRVDSLDSSYWSLSYMEAKRVLEPGYKDALTSKR*
AnnotationID:3786GeneID:3779
AnnotatorUID: diggins
Modification Date/Time: 2005-05-08 18:06:46
Gene Name:
Confidence Code:3
GeneProduct:putative lipoprotein
Cell Localization:()
Synonyms:PA1198
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0791,pfam00877
Secondary Functional Category(ies):cell envelope biogenesis
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAN67290.1|AE016355_8 (AE016780) NLP/P60 family protein [Pseudomonas putida KT2440]
          Length = 214

 Score =  220 bits (561), Expect = 4e-57
 Identities = 115/204 (56%), Positives = 142/204 (69%), Gaps = 11/204 (5%)

>gb|AAO55225.1| (AE016861) NLP/P60 family protein [Pseudomonas syringae pv. tomato
           str. DC3000]
          Length = 242

 Score =  202 bits (515), Expect = 8e-52
 Identities = 112/209 (53%), Positives = 145/209 (69%), Gaps = 17/209 (8%)

>gb|AAM37599.1| (AE011915) lipoprotein [Xanthomonas axonopodis pv. citri str. 306]
          Length = 217

 Score =  134 bits (336), Expect = 4e-31
 Identities = 76/179 (42%), Positives = 104/179 (58%), Gaps = 22/179 (12%)

Structural Features:
COG0791, Spr, Cell wall-associated hydrolases 
(invasion-associated proteins) 
[Cell envelope biogenesis, outer membrane]
CD-Length = 197 residues,  88.8% aligned
Length = 197, Score =  122 bits (306), Expect = 7e-29
Identities = 68/176 (38%), Positives = 89/176 (50%), Gaps = 4/176 (2%)

pfam00877, NLPC_P60, NlpC/P60 family.
CD-Length = 106 residues, 100.0% aligned
Length = 106, Score =  118 bits (296), Expect = 1e-27
Identities = 47/111 (42%), Positives = 67/111 (60%), Gaps = 6/111 (5%)
Genomic Context:
Comment:
ReferenceID:14919
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24703
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37579
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3779_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3779

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5997 PA1198_tr translation of PA1198 205 99.99 99.99 0 1052.0
167450 gb|AAG04587.1|AE004550_3 (AE004550) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 205 99.51 99.99 0 1049.0
167451 gb|AAN67290.1|AE016355_8 (AE016780) NLP/P60 family protein [Pseudomonas putida KT2440] 216 53.24 67.59 13 559.0
167452 gb|AAO55225.1| (AE016861) NLP/P60 family protein [Pseudomonas syringae pv. tomato str. DC3000] 243 47.32 62.13 39 523.0
5998 PA1199_tr translation of PA1199 214 42.52 53.73 46 397.0
GC ORFID: 46781How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1198Glimmer Score:
Start: 615118Stop: 615735
Length: 618
Start Codon: GTGTruncated Start:
Stop Codon: TAATruncated Stop:
Homolog: t_PA1198 translation of PA1198Homolog Bit Score 409.0
Other Homologs: psyr_15may02_Scaffold5_revised_gene6466 (ORF: BLASTX 154.0), t_PA1199 (ORF: BLASTX 153.0), t_PA3472 (ORF: BLASTX 134.0), t_PA1198 (ORF: GLIMMER)
GC ORF Sequence
GTGCCCATGCTTAAACGCTTAGCACCCCTCGTGCCCATGAGTTTCGTTCTGCTGCTGGCCGCTTGCGCCAGC
CATTCGCCGGAGCCGCAGGTCGCCAAAGAGCCGACCGCAGCCAAGAGCAGCATCGACGTCGAACGCGACGCG
ATCGCTTGGCAGGATGTTGAGGACGAAGGGGCGGACAATTCATCGGCTGGTACGCCTGCGCTGGCGTCCAGC
ATCCTCGAGCGCGCTTTCGAACTGATCGGTACGCCGTACCGTTTCGGCGGTACGACGGCGAAAGGCTTCGAT
TGCAGCGGCTTCGTCGGCTACCTGTTCCGCGAGGAGGCCGGCATCAAGCTGCCGCGCTCCACCCGCGAACTC
ATCGATATGGACGTGCCGCTGGTCTCCAAGGACGAGTTGCAGCCGGGCGACCTGCTGTTCTTCAACAACCGT
GGCCGTGGCCGCGTCAGCCACGCCGGCATCTACATCGGCGATGGCCAGTTCATCCATTCCGCCAGCCGTCGC
GGCGGCGGGGTGCGGGTGGACAGCCTGGACTCCAGCTACTGGAGCCTGAGCTACATGGAAGCCAAGCGGGTG
CTCGAACCCGGCTACAAGGACGCCCTGACGAGCAAGCGCTAA