ViewGene
Locus Name:
GeneID:
Location:

GeneID:3778
TrivialName: PA14_55530
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_55530
PAO1 Ortholog Locus:PA0677
Sequence Length:642
Protein Length:213
Start: 4942185
Stop: 4942826
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04066.1|AE004503_4 (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
Identities = 210/213 (98%), Positives = 211/213 (99%)
Sequence:
ATGTCCGGGTACACTGAACGCGCGACGACGCGGCGCCGGCAAGCCGGCTTCACCCTGATCGAGGTGATGGTC
GCGATCATGCTCATGGCCATCGTCAGCCTGATGGCCTGGCGCGGCCTGGACAGCATCGCCCGGGCCAGCGCG
CACCTGGAGGACAGCACCGAGCAGGGCGCCGCGCTACTGCGCGCGCTGAACCAGCTGGAGCGCGACATCGCC
CTGCACAGCGCCATCCGGGAGGAGACCGGCCTGCCCATCGGCGACGAGCCGATCCGGGCCGGCGACAGCCTG
CCGCCCGGACTCGCACTGAAGCGCCTGAGCGAGATTCCATTGCGCCTGGACATCGTCCGCGCCAGTACCGAG
CCAGGCGCGCCGCTGCAGCGCGTGCGCTGGTGGCGACAGGGCAAGGTCCTCTACCGCGCCGCCTCGCCCAGC
GGCGACCGCCTGCCGTTGCCGCCGCTGGCGGAGCGGGTGGCTGTGCTGGACGACGTGAGTCGGTTCGAGATC
CGTGCCTGGGTGCCGGGAAAGGGCTGGACGCGCCTGCCGGCACGCAGCAAAGTCCGCGCCAGCGGACTGGAG
ATCAGCCTGGCGCGGGTCACCCGCAACGGCGTGGAGCGCTATCGACGGGTGGTGGCCCTGCAATGA
Translation:
MSGYTERATTRRRQAGFTLIEVMVAIMLMAIVSLMAWRGLDSIARASAHLEDSTEQGAALLRALNQLERDIA
LHSAIREETGLPIGDEPIRAGDSLPPGLALKRLSEIPLRLDIVRASTEPGAPLQRVRWWRQGKVLYRAASPS
GDRLPLPPLAERVAVLDDVSRFEIRAWVPGKGWTRLPARSKVRASGLEISLARVTRNGVERYRRVVALQ*
AnnotationID:3785GeneID:3778
AnnotatorUID: danlee
Modification Date/Time: 2004-03-11 14:02:10
Gene Name:
Confidence Code:3
GeneProduct:probable type II secretion system protein
Cell Localization:()
Synonyms:PA0677, hxcW
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(19) Protein secretion/export apparatus
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG4795, PulJ, Type II secretory pathway, component PulJ [Intracellular trafficking and secretion]
CD-Length = 194 residues,  99.0% aligned
Score =  125 bits (316), Expect = 6e-30







   
Genomic Context:






   
Comment:


















    ReferenceID:7559




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24701




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3778
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5996
                           PA0677_tr
                           translation of PA0677
                           213
                           98.59
                           99.06
                           0
                           1052.0
     

     
     
167449
                           gb|AAG04066.1|AE004503_4
                           (AE004503) probable type II secretion system protein [Pseudomonas aeruginosa PAO1]
                           213
                           98.59
                           99.06
                           0
                           1052.0
     

     






      

          
GC ORFID: 46780How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0677Glimmer Score: 

          
Start: 11722Stop: 11081

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0677 translation of PA0677Homolog Bit Score 409.0

          
Other Homologs:  t_PA0677 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCCGGGTACACTGAACGCGCGACGACGCGGCGCCGGCAAGCCGGCTTCACCCTGATCGAGGTGATGGTC 
GCGATCATGCTCATGGCCATCGTCAGCCTGATGGCCTGGCGCGGCCTGGACAGCATCGCCCGGGCCAGCGCG 
CACCTGGAGGACAGCACCGAGCAGGGCGCCGCGCTACTGCGCGCGCTGAACCAGCTGGAGCGCGACATCGCC 
CTGCACAGCGCCATCCGGGAGGAGACCGGCCTGCCCATCGGCGACGAGCCGATCCGGGCCGGCGACAGCCTG 
CCGCCCGGACTCGCACTGAAGCGCCTGAGCGAGATTCCATTGCGCCTGGACATCGTCCGCGCCAGTACCGAG 
CCAGGCGCGCCGCTGCAGCGCGTGCGCTGGTGGCGACAGGGCAAGGTCCTCTACCGCGCCGCCTCGCCCAGC 
GGCGACCGCCTGCCGTTGCCGCCGCTGGCGGAGCGGGTGGCTGTGCTGGACGACGTGAGTCGGTTCGAGATC 
CGTGCCTGGGTGCCGGGAAAGGGCTGGACGCGCCTGCCGGCACGCAGCAAAGTCCGCGCCAGCGGACTGGAG 
ATCAGCCTGGCGCGGGTCACCCGCAACGGCGTGGAGCGCTATCGACGGGTGGTGGCCCTGCAATGA