ViewGene
Locus Name:
GeneID:
Location:

GeneID:3777
TrivialName: PA14_07420
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_07420
PAO1 Ortholog Locus:PA0571
Sequence Length:615
Protein Length:204
Start: 634778
Stop: 634164
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03960.1|AE004493_5 (AE004493) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 199/204 (97%), Positives = 202/204 (99%)
Sequence:
ATGACCGACCGCCTTCCCTGCCGCGCCTGCGGCCATCTCATTCTCCCGACCACGGCGGCGAGGAACGACGGA
CTGTGCATGCCCTGCAAGGGCGGCTACCGGCAGAACATCGAGGATGGCAAGCGTTTCCACACGGAGCGACGG
CGCTACCTGGCGAGTCCGCAGGCGCTGTACTGGAGCGCGCTGGTGAGTCGCGTCTACGATGGCCGCGAGGGA
TTCGCCGGGCTGTCGCCGGCCGAGCGGAGCTACTACGCAGTGAGCGTGCTCAGCGGCGAAGTGCACAACGGC
GGCTTCGACCAGTACTTCGGCAACTCCTCCGGCGACCAGTACCAGGCGGCGCGCGCGGGTCTTCGCGAATTG
GAGGCGGAGGACGCCCTGGCCCTGCTGGAGCGAGCCGCCGCCCTGCTGTTCGGCGACGCTCCGGTGCCAGTC
TCCCAGGCCGAACGCCAGTTGCGCATGCCGACCTGGGCCGATCAACCCGACCGCGACTGCGAAGCGGCCCTG
AATGCGCTGGACACGCGCTTCTACGCCCTGGCCGACGCGCTGGGCGAACGCCTGCTGGCCCATGCCCGCCAC
CATGCATTGTTCGCCCTGGACGAGCCCGATGAAGCCTGA
Translation:
MTDRLPCRACGHLILPTTAARNDGLCMPCKGGYRQNIEDGKRFHTERRRYLASPQALYWSALVSRVYDGREG
FAGLSPAERSYYAVSVLSGEVHNGGFDQYFGNSSGDQYQAARAGLRELEAEDALALLERAAALLFGDAPVPV
SQAERQLRMPTWADQPDRDCEAALNALDTRFYALADALGERLLAHARHHALFALDEPDEA*
AnnotationID:3784GeneID:3777
AnnotatorUID: diggins
Modification Date/Time: 2005-03-29 08:08:21
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0571
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7557




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24699




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3777
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5995
                           PA0571_tr
                           translation of PA0571
                           204
                           97.54
                           99.01
                           0
                           1055.0
     

     
     
167448
                           gb|AAG03960.1|AE004493_5
                           (AE004493) hypothetical protein PA0571 [Pseudomonas aeruginosa PAO1]
                           204
                           97.54
                           99.01
                           0
                           1055.0
     

     






      

          
GC ORFID: 46779How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0571Glimmer Score: 

          
Start: 6436121Stop: 6435507

          
Length: 615


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0571 translation of PA0571Homolog Bit Score 410.0

          
Other Homologs:  t_PA0571 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCGACCGCCTTCCCTGCCGCGCCTGCGGCCATCTCATTCTCCCGACCACGGCGGCGAGGAACGACGGA 
CTGTGCATGCCCTGCAAGGGCGGCTACCGGCAGAACATCGAGGATGGCAAGCGTTTCCACACGGAGCGACGG 
CGCTACCTGGCGAGTCCGCAGGCGCTGTACTGGAGCGCGCTGGTGAGTCGCGTCTACGATGGCCGCGAGGGA 
TTCGCCGGGCTGTCGCCGGCCGAGCGGAGCTACTACGCAGTGAGCGTGCTCAGCGGCGAAGTGCACAACGGC 
GGCTTCGACCAGTACTTCGGCAACTCCTCCGGCGACCAGTACCAGGCGGCGCGCGCGGGTCTTCGCGAATTG 
GAGGCGGAGGACGCCCTGGCCCTGCTGGAGCGAGCCGCCGCCCTGCTGTTCGGCGACGCTCCGGTGCCAGTC 
TCCCAGGCCGAACGCCAGTTGCGCATGCCGACCTGGGCCGATCAACCCGACCGCGACTGCGAAGCGGCCCTG 
AATGCGCTGGACACGCGCTTCTACGCCCTGGCCGACGCGCTGGGCGAACGCCTGCTGGCCCATGCCCGCCAC 
CATGCATTGTTCGCCCTGGACGAGCCCGATGAAGCCTGA