ViewGene
Locus Name:
GeneID:
Location:

GeneID:3776
TrivialName: PA14_01540
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_01540
PAO1 Ortholog Locus:PA0126
Sequence Length:624
Protein Length:207
Start: 142785
Stop: 142162
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03516.1|AE004450_11 (AE004450) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/207 (99%), Positives = 205/207 (99%), Gaps = 1/207 (0%)
Sequence:
ATGCCTACACGCGTTCTGCGCGGCCTCGTCGCCGCCCTCCCACTGTTGTTCCTCGCCGCCTGCTCGGACTCC
GCTCCGTCCAGCGAGGAGATCGCCCGCCTGCTCGCCGAGCGCGGCTTCGACAAACCCGCCTGCGCCAGCTCC
ACCCTGTTCAAGACCTTCCCGGTGACGCTCTCCGACAGCTTCTCCGGCCCCGGCCCGGCGAAAGGCAACGCC
GCGGTCTACGACGCGCTGGTCGGCGTCGGCCTGCTGCGCCGCGACGGCGATTCCTACGACCTCACGCCCGCC
GGCCGCGAGGACTACAAGTCCGAGTCGAAGGCCTTCTGCTACAGCAGCGGCTTCGACGTCAGCGTCCGTTCG
GTGGACCCCGCCAAGCCCGACGACTACGGCCCGGCCGTGGAAAAGGGCTGGTTGGTCACCGTCGAGGTCAAG
CCACGCGAAGTGAAGGACTGGGCGAAGAACCCCGAGGTGCTCAAGCAGGCCAGCCTGACCACCCTGCAACAG
ATCACCCAACCGCAGGTCGGCCAGGTCTCGCTGGTCAAGCCACGCGGCGAGGAAGGCTACAAGCTCGTCAAC
ACCCGCTTCTCGCCCAGGCAGGGCTTCCACTTCAACCAGGCCTGGTAA
Translation:
MPTRVLRGLVAALPLLFLAACSDSAPSSEEIARLLAERGFDKPACASSTLFKTFPVTLSDSFSGPGPAKGNA
AVYDALVGVGLLRRDGDSYDLTPAGREDYKSESKAFCYSSGFDVSVRSVDPAKPDDYGPAVEKGWLVTVEVK
PREVKDWAKNPEVLKQASLTTLQQITQPQVGQVSLVKPRGEEGYKLVNTRFSPRQGFHFNQAW*
AnnotationID:3783GeneID:3776
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 19:07:15
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0126
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7555




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24697




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3776
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5994
                           PA0126_tr
                           translation of PA0126
                           207
                           99.03
                           99.03
                           1
                           1056.0
     

     
     
167447
                           gb|AAG03516.1|AE004450_11
                           (AE004450) hypothetical protein PA0126 [Pseudomonas aeruginosa PAO1]
                           207
                           99.03
                           99.03
                           1
                           1056.0
     

     






      

          
GC ORFID: 46778How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0126Glimmer Score: 

          
Start: 5944124Stop: 5943501

          
Length: 624


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAATruncated Stop: 

          
Homolog: t_PA0126 translation of PA0126Homolog Bit Score 410.0

          
Other Homologs:  t_PA0126 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCTACACGCGTTCTGCGCGGCCTCGTCGCCGCCCTCCCACTGTTGTTCCTCGCCGCCTGCTCGGACTCC 
GCTCCGTCCAGCGAGGAGATCGCCCGCCTGCTCGCCGAGCGCGGCTTCGACAAACCCGCCTGCGCCAGCTCC 
ACCCTGTTCAAGACCTTCCCGGTGACGCTCTCCGACAGCTTCTCCGGCCCCGGCCCGGCGAAAGGCAACGCC 
GCGGTCTACGACGCGCTGGTCGGCGTCGGCCTGCTGCGCCGCGACGGCGATTCCTACGACCTCACGCCCGCC 
GGCCGCGAGGACTACAAGTCCGAGTCGAAGGCCTTCTGCTACAGCAGCGGCTTCGACGTCAGCGTCCGTTCG 
GTGGACCCCGCCAAGCCCGACGACTACGGCCCGGCCGTGGAAAAGGGCTGGTTGGTCACCGTCGAGGTCAAG 
CCACGCGAAGTGAAGGACTGGGCGAAGAACCCCGAGGTGCTCAAGCAGGCCAGCCTGACCACCCTGCAACAG 
ATCACCCAACCGCAGGTCGGCCAGGTCTCGCTGGTCAAGCCACGCGGCGAGGAAGGCTACAAGCTCGTCAAC 
ACCCGCTTCTCGCCCAGGCAGGGCTTCCACTTCAACCAGGCCTGGTAA