ViewGene
Locus Name:
GeneID:
Location:

GeneID:3775
TrivialName: PA14_69040
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69040
PAO1 Ortholog Locus:PA5228
Sequence Length:612
Protein Length:203
Start: 6156721
Stop: 6157332
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08613.1|AE004935_10 (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/203 (99%), Positives = 202/203 (99%)
Sequence:
ATGATCGAATCGCAAGACCTCAGCCGCCCGGCCCTGCGCCGCAAGCTCCGCCAGGCGCGCCGCGCGCTCTCC
CCCCTGCAGCAACGCCTCGCCGCCCGCGCCCTCTATCGACAACTGGCGCAGCATCCCCTTTTTCGCCGTGCC
CGCCATATCGCCCTGTACCTGCCCAACGACGGCGAGATCGACCCGCGTCCGCTGCTGCGTGCGGCGCAGAAG
CGCGGCAAGGCCACCTACCTGCCGGTGCTGGCGCCCTGGCCGCGGACGCGCATGGTGTTCCAGCGGGTCGGC
AGCGGCGAACGCTGGACCCGCAACCGCTTCCGCATCAGCGAACCGCTGGCCGACGCCGGCCGCCAGCGCAAG
GCCTGGGCGCTGGACCTGGTACTGCTGCCGCTGGTGGGGTTCGACGAACAGGGCGGGCGCCTGGGCATGGGC
GGCGGCTTCTACGACCGCAGCCTGGCCTACCTGACGAGGCGCAAAAATGGTCACAAACCGACGCTGATCGGC
CTGGCCCATGAATGTCAGAAGGTGGATCGACTGGCGCTGGCCAGCTGGGACATTCCCCTGGCGGGAACGGTG
ACCGATGCGGGCTGGTACGTGGCAGGGAAACGCTAG
Translation:
MIESQDLSRPALRRKLRQARRALSPLQQRLAARALYRQLAQHPLFRRARHIALYLPNDGEIDPRPLLRAAQK
RGKATYLPVLAPWPRTRMVFQRVGSGERWTRNRFRISEPLADAGRQRKAWALDLVLLPLVGFDEQGGRLGMG
GGFYDRSLAYLTRRKNGHKPTLIGLAHECQKVDRLALASWDIPLAGTVTDAGWYVAGKR*
AnnotationID:3782GeneID:3775
AnnotatorUID: diggins
Modification Date/Time: 2005-03-16 06:06:46
Gene Name:
Confidence Code:3
GeneProduct:putative 5-formyltetrahydrofolate cyclo-ligase family protein
Cell Localization:()
Synonyms:PA5228
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01812
Secondary Functional Category(ies):biosynthesiis of cofactors, prosthetic groups and carriers
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58653.1| (AE016875) 5-formyltetrahydrofolate cyclo-ligase family protein
           [Pseudomonas syringae pv. tomato str. DC3000]
          Length = 203

 Score =  299 bits (765), Expect = 8e-81
 Identities = 145/199 (72%), Positives = 165/199 (82%)

>gb|AAN70768.1|AE016721_1 (AE016793) 5-formyltetrahydrofolate cyclo-ligase family protein
           [Pseudomonas putida KT2440]
          Length = 202

 Score =  299 bits (765), Expect = 8e-81
 Identities = 147/200 (73%), Positives = 161/200 (80%)








 
Structural Features:
pfam01812, 5-FTHF_cyc-lig, 5-formyltetrahydrofolate cyclo-ligase family.
CD-Length = 182 residues,  96.7% aligned
Score =  131 bits (330), Expect = 6e-32
Identities = 67/180 (37%), Positives = 99/180 (55%), Gaps = 4/180 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7553




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24695




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34872




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3775_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3775
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5993
                           PA5228_tr
                           translation of PA5228
                           203
                           99.50
                           99.50
                           0
                           1055.0
     

     
     
167432
                           gb|AAG08613.1|AE004935_10
                           (AE004935) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           203
                           99.50
                           99.50
                           0
                           1055.0
     

     
     
167434
                           gb|AAN70768.1|AE016721_1
                           (AE016793) 5-formyltetrahydrofolate cyclo-ligase family protein [Pseudomonas putida KT2440]
                           203
                           72.41
                           79.80
                           1
                           765.0
     

     
     
167433
                           gb|AAO58653.1|
                           (AE016875) 5-formyltetrahydrofolate cyclo-ligase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           203
                           71.42
                           81.77
                           0
                           763.0
     

     
     
167436
                           emb|CAE15977.1|
                           (BX571871) unnamed protein product [Photorhabdus luminescens subsp. laumondii TTO1]
                           208
                           40.86
                           55.28
                           15
                           374.0
     

     






      

          
GC ORFID: 46777How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5228Glimmer Score: 

          
Start: 5420408Stop: 5421019

          
Length: 612


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA5228 translation of PA5228Homolog Bit Score 410.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3853 (ORF: BLASTX 308.0), t_PA5228 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGATCGAATCGCAAGACCTCAGCCGCCCGGCCCTGCGCCGCAAGCTCCGCCAGGCGCGCCGCGCGCTCTCC 
CCCCTGCAGCAACGCCTCGCCGCCCGCGCCCTCTATCGACAACTGGCGCAGCATCCCCTTTTTCGCCGTGCC 
CGCCATATCGCCCTGTACCTGCCCAACGACGGCGAGATCGACCCGCGTCCGCTGCTGCGTGCGGCGCAGAAG 
CGCGGCAAGGCCACCTACCTGCCGGTGCTGGCGCCCTGGCCGCGGACGCGCATGGTGTTCCAGCGGGTCGGC 
AGCGGCGAACGCTGGACCCGCAACCGCTTCCGCATCAGCGAACCGCTGGCCGACGCCGGCCGCCAGCGCAAG 
GCCTGGGCGCTGGACCTGGTACTGCTGCCGCTGGTGGGGTTCGACGAACAGGGCGGGCGCCTGGGCATGGGC 
GGCGGCTTCTACGACCGCAGCCTGGCCTACCTGACGAGGCGCAAAAATGGTCACAAACCGACGCTGATCGGC 
CTGGCCCATGAATGTCAGAAGGTGGATCGACTGGCGCTGGCCAGCTGGGACATTCCCCTGGCGGGAACGGTG 
ACCGATGCGGGCTGGTACGTGGCAGGGAAACGCTAG