ViewGene

Locus Name:
GeneID:
Location:

GeneID:3774
TrivialName: PA14_20020
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20020
PAO1 Ortholog Locus:PA3407
Sequence Length:618
Protein Length:205
Start: 1724698
Stop: 1725315
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06795.1|AE004762_1 (AE004762) heme acquisition protein HasAp [Pseudomonas aeruginosa PAO1]
Identities = 205/205 (100%), Positives = 205/205 (100%)
Sequence:
ATGAGCATTTCGATTTCCTACAGCACCACCTACAGCGGCTGGACCGTAGCGGATTACCTGGCGGACTGGTCG
GCCTACTTCGGCGACGTCAACCATCGTCCGGGCCAGGTGGTGGACGGCAGTAATACCGGCGGCTTCAACCCC
GGTCCGTTCGACGGCAGCCAGTACGCGCTGAAGAGCACCGCCAGCGACGCGGCCTTCATCGCCGGCGGCGAC
CTCCACTACACCCTGTTCAGCAACCCCAGCCACACCCTGTGGGGCAAGCTGGACAGCATCGCCCTCGGCGAC
ACCCTGACCGGCGGCGCCTCCAGCGGTGGCTACGCCCTGGACAGCCAGGAGGTGAGCTTCAGCAACCTGGGC
CTGGATTCGCCGATCGCCCAGGGCCGCGACGGCACCGTGCACAAGGTGGTCTACGGCCTGATGAGCGGTGAC
AGCAGCGCCCTGCAGGGGCAGATCGACGCGCTGCTGAAAGCGGTCGACCCGAGCCTGTCGATCAACTCCACC
TTCGACCAGTTGGCCGCGGCCGGCGTCGCCCATGCCACCCCGGCTGCGGCAGCGGCGGAGGTCGGCGTGGTC
GGCGTGCAGGAACTGCCGCACGACCTGGCCCTGGCGGCCTGA
Translation:
MSISISYSTTYSGWTVADYLADWSAYFGDVNHRPGQVVDGSNTGGFNPGPFDGSQYALKSTASDAAFIAGGD
LHYTLFSNPSHTLWGKLDSIALGDTLTGGASSGGYALDSQEVSFSNLGLDSPIAQGRDGTVHKVVYGLMSGD
SSALQGQIDALLKAVDPSLSINSTFDQLAAAGVAHATPAAAAAEVGVVGVQELPHDLALAA*
AnnotationID:3781GeneID:3774
AnnotatorUID: diggins
Modification Date/Time: 2004-08-27 13:01:59
Gene Name:hasAp
Confidence Code:1
GeneProduct:heme acquisition protein HasAp
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:heme binding protein
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAA88491.1| (AB023289) heme-binding protein [Pseudomonas fluorescens]
          Length = 206

 Score =  130 bits (328), Expect = 4e-30
 Identities = 86/217 (39%), Positives = 120/217 (55%), Gaps = 23/217 (10%)
Structural Features:
Genomic Context:
Comment:
ReferenceID:7551
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24693
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:34070
Author/Investigator(s): Letoffe S, Redeker V, Wandersman C.
Title: Isolation and characterization of an extracellular haem-binding protein from Pseudomonas aeruginosa that shares function and sequence similarities with the Serratia marcescens HasA haemophore.
PubMed: 9680211
MedLine:
Source:
Mol Microbiol. 1998 Jun;28(6):1223-34.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9680211
ReferenceID:34071
Author/Investigator(s): Arevalo-Ferro C, Hentzer M, Reil G, Gorg A, Kjelleberg S, Givskov M, Riedel K, Eberl L.
Title: Identification of quorum-sensing regulated proteins in the opportunistic pathogen Pseudomonas aeruginosa by proteomics.
PubMed: 14641579
MedLine:
Source:
Environ Microbiol. 2003 Dec;5(12):1350-69.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=14641579
Homologs By Global Alignment
Gene ID:3774

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5992 PA3407_tr translation of PA3407 205 99.99 99.99 0 1054.0
167429 gb|AAG06795.1|AE004762_1 (AE004762) heme acquisition protein HasAp [Pseudomonas aeruginosa PAO1] 205 99.99 99.99 0 1054.0
167430 emb|CAA76520.1| (Y16895) HasAp [Pseudomonas aeruginosa] 205 99.99 99.99 0 1054.0
167431 emb|CAA57068.1| (X81195) hasA [Serratia marcescens] 210 47.14 64.76 27 478.0
GC ORFID: 46776How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3407Glimmer Score:
Start: 3229234Stop: 3228617
Length: 618
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3407 translation of PA3407Homolog Bit Score 410.0
Other Homologs: t_PA3407 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCATTTCGATTTCCTACAGCACCACCTACAGCGGCTGGACCGTAGCGGATTACCTGGCGGACTGGTCG
GCCTACTTCGGCGACGTCAACCATCGTCCGGGCCAGGTGGTGGACGGCAGTAATACCGGCGGCTTCAACCCC
GGTCCGTTCGACGGCAGCCAGTACGCGCTGAAGAGCACCGCCAGCGACGCGGCCTTCATCGCCGGCGGCGAC
CTCCACTACACCCTGTTCAGCAACCCCAGCCACACCCTGTGGGGCAAGCTGGACAGCATCGCCCTCGGCGAC
ACCCTGACCGGCGGCGCCTCCAGCGGTGGCTACGCCCTGGACAGCCAGGAGGTGAGCTTCAGCAACCTGGGC
CTGGATTCGCCGATCGCCCAGGGCCGCGACGGCACCGTGCACAAGGTGGTCTACGGCCTGATGAGCGGTGAC
AGCAGCGCCCTGCAGGGGCAGATCGACGCGCTGCTGAAAGCGGTCGACCCGAGCCTGTCGATCAACTCCACC
TTCGACCAGTTGGCCGCGGCCGGCGTCGCCCATGCCACCCCGGCTGCGGCAGCGGCGGAGGTCGGCGTGGTC
GGCGTGCAGGAACTGCCGCACGACCTGGCCCTGGCGGCCTGA