ViewGene

Locus Name:
GeneID:
Location:

GeneID:3773
TrivialName: PA14_47240
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47240
PAO1 Ortholog Locus:PA1315
Sequence Length:615
Protein Length:204
Start: 4208879
Stop: 4209493
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04704.1|AE004560_12 (AE004560) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 204/204 (100%), Positives = 204/204 (100%)
Sequence:
ATGCCCGATCGCCACGCCGAACAGCCTGCCCGCCAACCGCGCACCAAGCCTGCGGAGGTTCGTCTCGAGGAA
CTGATGGCGGCGGCGCAGCAACTGTTCCTAGACAAGGGTGTGGACGCCACCACCATCAGCGACATCGTCGCT
GCCGCGGGGGTCGCCAAGGGTACCTTCTATCACTACTTCCAAGCCAAGACCGACATCCTCCTGGCCCTGCGC
GAGCGCTTCACCCAGGCTTTCCAGCAGCGCATCGCGAATGCCGTCGAGGCCTGTCCGGCGAACGACCATCCC
GGCCGCCTGCGCGCCTGGACCGAGAGCGGCCTGGCGGGCTACCTGGAGGGCTACCGGCTGCACGATGTGGTC
TACAGCGAACACCATCACCACCAGCGCGGCAACCAGGAGCGCGACCGCGTGCTGGAGCAATTGGCGGAGCTA
CTGGAGAACGGCGCGGCGGCCGGCGCCTGGCCGCTGCGCAACCCACGGCTGAACGCCCTGCTGCTCTACTCC
GGGCTGCATGGCGCCGCCGACGACGCCATCGCCGGCGGCCGCCTGGATACCCAGCCGCTGGCCGGCGAACTC
GCCGATGCCTTCCTGCGCCTGCTCGGTGCCAGCGACTGA
Translation:
MPDRHAEQPARQPRTKPAEVRLEELMAAAQQLFLDKGVDATTISDIVAAAGVAKGTFYHYFQAKTDILLALR
ERFTQAFQQRIANAVEACPANDHPGRLRAWTESGLAGYLEGYRLHDVVYSEHHHHQRGNQERDRVLEQLAEL
LENGAAAGAWPLRNPRLNALLLYSGLHGAADDAIAGGRLDTQPLAGELADAFLRLLGASD*
AnnotationID:3780GeneID:3773
AnnotatorUID: diggins
Modification Date/Time: 2005-02-23 06:06:25
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>dbj|BAB49651.1| (AP002999) probable transcriptional regulator [Mesorhizobium loti]
          Length = 201

 Score =  181 bits (458), Expect = 3e-45
 Identities = 92/191 (48%), Positives = 129/191 (67%)

Structural Features:
pfam00440, TetR_N, Bacterial regulatory proteins, tetR family
CD-Length = 47 residues, 100.0% aligned
Score = 59.2 bits (144), Expect = 3e-10
Identities = 22/47 (46%), Positives = 34/47 (72%)
Genomic Context:
Comment:
ReferenceID:7549
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24691
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37457
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3773_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3773

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5991 PA1315_tr translation of PA1315 204 99.99 99.99 0 1055.0
167427 gb|AAG04704.1|AE004560_12 (AE004560) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 204 99.99 99.99 0 1055.0
167428 dbj|BAB49651.1| (AP002999) probable transcriptional regulator [Mesorhizobium loti] 204 46.07 64.70 3 451.0
GC ORFID: 46775How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1315Glimmer Score:
Start: 745030Stop: 744416
Length: 615
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1315 translation of PA1315Homolog Bit Score 410.0
Other Homologs: t_PA1315 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGATCGCCACGCCGAACAGCCTGCCCGCCAACCGCGCACCAAGCCTGCGGAGGTTCGTCTCGAGGAA
CTGATGGCGGCGGCGCAGCAACTGTTCCTAGACAAGGGTGTGGACGCCACCACCATCAGCGACATCGTCGCT
GCCGCGGGGGTCGCCAAGGGTACCTTCTATCACTACTTCCAAGCCAAGACCGACATCCTCCTGGCCCTGCGC
GAGCGCTTCACCCAGGCTTTCCAGCAGCGCATCGCGAATGCCGTCGAGGCCTGTCCGGCGAACGACCATCCC
GGCCGCCTGCGCGCCTGGACCGAGAGCGGCCTGGCGGGCTACCTGGAGGGCTACCGGCTGCACGATGTGGTC
TACAGCGAACACCATCACCACCAGCGCGGCAACCAGGAGCGCGACCGCGTGCTGGAGCAATTGGCGGAGCTA
CTGGAGAACGGCGCGGCGGCCGGCGCCTGGCCGCTGCGCAACCCACGGCTGAACGCCCTGCTGCTCTACTCC
GGGCTGCATGGCGCCGCCGACGACGCCATCGCCGGCGGCCGCCTGGATACCCAGCCGCTGGCCGGCGAACTC
GCCGATGCCTTCCTGCGCCTGCTCGGTGCCAGCGACTGA