ViewGene
Locus Name:
GeneID:
Location:

GeneID:3772
TrivialName: PA14_73000
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73000
PAO1 Ortholog Locus:PA5534
Sequence Length:642
Protein Length:213
Start: 6501489
Stop: 6500848
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08919.1|AE004966_1 (AE004966) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 204/213 (95%), Positives = 208/213 (97%)
Sequence:
ATGAGCGCACTGCCACAGGAAAGTCCGTTGCCGCGCCAGGCGTTCGGCGAAGACCCCCAGGTGCTGGCCGAG
GTGCTTCGCGACGGGGTCAACCTGGCGGTCTGGACACGCCGGTTGAACCCGGCGCTGCGCGACTTCGCCGCC
GCCTTAGTACGCAACCGGCCGGGACTGGCGCTGAGCCAGACGCTGGAGATGGAAGAGGAACGGCTACCCGCC
TTGGACGGCCTGCTCGACGCGCGGCAACTGCCGGGACAAGCCGATTTCCTCGACGACCTGGGCTGGCTGGTC
GAGGCCTTCTTTTGCCTGACCGGGGCGCGGCGTATCGGCCTGCGCCTGCGCGTTCTGGATAAACCGATGTGC
CCGCGTTTCCATGTCGACCACGTGCCGCTGcggctGgtcaccacctAccagggcGCTGCCAGCGAAtGGCTG
GACGAGTCCGGCCTgGACCGTCGGCTGCTTGGTGGAGCACAGGCGGAAGTTGTCGATGAACAGCTTATCCAT
AGCttGTCCACAGGCGACGTGGCGCTGCTCAAGGGCGAACGCTGGGAGGGTAACGAAGGTGCCGGACTGGTG
CATCGCTCGCCGCGAGCGGAGCCCGGGCTGGCGCGCCTGCTGTTGACCCTGGACTGGCTTGCCTGA
Translation:
MSALPQESPLPRQAFGEDPQVLAEVLRDGVNLAVWTRRLNPALRDFAAALVRNRPGLALSQTLEMEEERLPA
LDGLLDARQLPGQADFLDDLGWLVEAFFCLTGARRIGLRLRVLDKPMCPRFHVDHVPLRLVTTYQGAASEWL
DESGLDRRLLGGAQAEVVDEQLIHSLSTGDVALLKGERWEGNEGAGLVHRSPRAEPGLARLLLTLDWLA*
AnnotationID:3779GeneID:3772
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:05
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5534
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
CDD Search: No hits above 0.01 threshold.






   
Genomic Context:






   
Comment:


















    ReferenceID:7547




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24689




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3772
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5990
                           PA5534_tr
                           translation of PA5534
                           213
                           95.77
                           97.65
                           0
                           1056.0
     

     
     
167424
                           gb|AAG08919.1|AE004966_1
                           (AE004966) hypothetical protein PA5534 [Pseudomonas aeruginosa PAO1]
                           213
                           95.77
                           97.65
                           0
                           1056.0
     

     
     
167425
                           gb|AAN70925.1|AE016736_8
                           (AE016794) conserved hypothetical protein [Pseudomonas putida KT2440]
                           216
                           55.09
                           67.12
                           11
                           543.0
     

     
     
167426
                           gb|AAO58944.1|
                           (AE016876) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           218
                           53.66
                           66.05
                           7
                           545.0
     

     






      

          
GC ORFID: 46774How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5534Glimmer Score: 

          
Start: 5765178Stop: 5764537

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5534 translation of PA5534Homolog Bit Score 411.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4169 (ORF: BLASTX 209.0), t_PA5534 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCACTGCCACAGGAAAGTCCGTTGCCGCGCCAGGCGTTCGGCGAAGACCCCCAGGTGCTGGCCGAG 
GTGCTTCGCGACGGGGTCAACCTGGCGGTCTGGACACGCCGGTTGAACCCGGCGCTGCGCGACTTCGCCGCC 
GCCTTAGTACGCAACCGGCCGGGACTGGCGCTGAGCCAGACGCTGGAGATGGAAGAGGAACGGCTACCCGCC 
TTGGACGGCCTGCTCGACGCGCGGCAACTGCCGGGACAAGCCGATTTCCTCGACGACCTGGGCTGGCTGGTC 
GAGGCCTTCTTTTGCCTGACCGGGGCGCGGCGTATCGGCCTGCGCCTGCGCGTTCTGGATAAACCGATGTGC 
CCGCGTTTCCATGTCGACCACGTGCCGCTGcggctGgtcaccacctAccagggcGCTGCCAGCGAAtGGCTG 
GACGAGTCCGGCCTgGACCGTCGGCTGCTTGGTGGAGCACAGGCGGAAGTTGTCGATGAACAGCTTATCCAT 
AGCttGTCCACAGGCGACGTGGCGCTGCTCAAGGGCGAACGCTGGGAGGGTAACGAAGGTGCCGGACTGGTG 
CATCGCTCGCCGCGAGCGGAGCCCGGGCTGGCGCGCCTGCTGTTGACCCTGGACTGGCTTGCCTGA