ViewGene

Locus Name:
GeneID:
Location:

GeneID:3771
TrivialName: PA14_68280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_68280
PAO1 Ortholog Locus:PA5168
Sequence Length:633
Protein Length:210
Start: 6090376
Stop: 6091008
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08553.1|AE004929_8 (AE004929) probable dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
Identities = 206/210 (98%), Positives = 208/210 (99%)
Sequence:
ATGCACGCGCTCGCGCGCGTCTGGGCGCGCCTGGAGGAAGGCCTGATCGCCTTCCTCCTCGCCGCCATGACG
CTGGTTACCTTCGTTTATGTGGTCCTCAACAACCTCTACACGCTGTTCTACGATCTCGCCGACCTCTGGGAG
GGCGGCAACGAGACGCTGCTCGCCATCGGCGACGCCATCCTCAGCCTGGCCCAGGAGATGACCTGGAGTAAC
GCCCTGACCAAGGCCCTGTTCGCCTGGCTGATCTTCCTCGGCATCGCCTACGGCGTACGCACCGCCGGGCAC
CTCGGCGTGGACGTGCTGGTGAAGCTGGCTTCGCGGCCGGTACAGCGGGTCCTCGGCGTGATCGCCTGCCTG
GCCTGCCTCGGCTACGCCGGCCTGCTCTGCGTGGCCAGCTACGACTGGGTGAAGACCCTGTTCATCGCCGGC
ATCGGCGCCGAGGACCTCGACCACTTCGGCATCCGCCAATGGCACATCGGCCTGATCGTGCCGGTCGGTTTC
GCCCTGGTGTTCATCCGTTTCGCCGAGATCCTCGTGCGCATCCTGCGCAACCGTCAGACCGGCCTGGGCCTG
GCCGACGAGGCCGCCGACGCGCTGAAGCTGACCGAGCACGAGGAGCCGAAAGCATGA
Translation:
MHALARVWARLEEGLIAFLLAAMTLVTFVYVVLNNLYTLFYDLADLWEGGNETLLAIGDAILSLAQEMTWSN
ALTKALFAWLIFLGIAYGVRTAGHLGVDVLVKLASRPVQRVLGVIACLACLGYAGLLCVASYDWVKTLFIAG
IGAEDLDHFGIRQWHIGLIVPVGFALVFIRFAEILVRILRNRQTGLGLADEAADALKLTEHEEPKA*
AnnotationID:3778GeneID:3771
AnnotatorUID: danlee
Modification Date/Time: 2004-02-04 14:02:55
Gene Name:
Confidence Code:3
GeneProduct:probable dicarboxylate transporter
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3090
Secondary Functional Category(ies):Transport of small molecules
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
Genomic Context:
Fourth of five ORF cluster.
Comment:
ReferenceID:7545
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17000
Author/Investigator(s):
Title:
PubMed:
MedLine:
Source:
NCBI - Conserved Domain Search.
Reference Type:Blast (text/plain)
Data:PA5168_CDS.cgi
URL:
ReferenceID:24687
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3771

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5988 PA5168_tr translation of PA5168 210 98.09 99.04 0 1057.0
167420 gb|AAG08553.1|AE004929_8 (AE004929) probable dicarboxylate transporter [Pseudomonas aeruginosa PAO1] 210 98.09 99.04 0 1057.0
167421 emb|CAC44172.1| (AJ313422) probable dicarboxylate transporter [Pseudomonas stutzeri] 213 75.58 83.56 4 821.0
5989 PA0885_tr translation of PA0885 212 68.86 80.66 2 755.0
167422 gb|AAG04274.1|AE004523_2 (AE004523) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1] 212 68.86 80.66 2 755.0
GC ORFID: 46773How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5168Glimmer Score:
Start: 5354062Stop: 5354694
Length: 633
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5168 translation of PA5168Homolog Bit Score 411.0
Other Homologs: t_PA0885 (ORF: BLASTX 296.0), t_PA5168 (ORF: GLIMMER)
GC ORF Sequence
ATGCACGCGCTCGCGCGCGTCTGGGCGCGCCTGGAGGAAGGCCTGATCGCCTTCCTCCTCGCCGCCATGACG
CTGGTTACCTTCGTTTATGTGGTCCTCAACAACCTCTACACGCTGTTCTACGATCTCGCCGACCTCTGGGAG
GGCGGCAACGAGACGCTGCTCGCCATCGGCGACGCCATCCTCAGCCTGGCCCAGGAGATGACCTGGAGTAAC
GCCCTGACCAAGGCCCTGTTCGCCTGGCTGATCTTCCTCGGCATCGCCTACGGCGTACGCACCGCCGGGCAC
CTCGGCGTGGACGTGCTGGTGAAGCTGGCTTCGCGGCCGGTACAGCGGGTCCTCGGCGTGATCGCCTGCCTG
GCCTGCCTCGGCTACGCCGGCCTGCTCTGCGTGGCCAGCTACGACTGGGTGAAGACCCTGTTCATCGCCGGC
ATCGGCGCCGAGGACCTCGACCACTTCGGCATCCGCCAATGGCACATCGGCCTGATCGTGCCGGTCGGTTTC
GCCCTGGTGTTCATCCGTTTCGCCGAGATCCTCGTGCGCATCCTGCGCAACCGTCAGACCGGCCTGGGCCTG
GCCGACGAGGCCGCCGACGCGCTGAAGCTGACCGAGCACGAGGAGCCGAAAGCATGA