ViewGene
Locus Name:
GeneID:
Location:

GeneID:377
TrivialName: PA14_33960
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_33960
PAO1 Ortholog Locus:PA2373
Sequence Length:2007
Protein Length:668
Start: 3019590
Stop: 3017584
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05761.1|AE004663_7 (AE004663) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 641/668 (95%), Positives = 651/668 (97%)
Sequence:
ATGCCCCGTCCCACCGATAGCAATACCAGCCTCTCCCTGACCGCCTCGGCGCTGGCAGCCCTGTTCCCGGAG
CGTCTGGCCGGGGAAGAACGCCTGAACGCACTGCCCGGTTGGGAACTGCTGGGCTACAGCGCCAGCCCCTTA
GCCCTGGACGGCGCAATCGCCACCCATCTCACCGCCACCCTGCACAACGACGCCGACCAGCGTCCGCTCGAC
GGCCTGGTCGCGGAGATCCGCCAACTCCCCGGCGATGCCAGCGCCGAGCGCTACCAGGTGCTGTTGCGCCCC
TGGCTCTGGTGGCTGACGCTGGCCAGCAACAACCGGGTGTTCCAGAACCTGGCCACCAGCGACATCGTCACC
CAGGTCTTCGACCAGCACGGCTTCAGCGACTACCAGTTGCAGCTCAGCGGCAGCTACCAGCCCCGCGAATAC
TGCGTGCAGTACGGCGAGAGCGACCTTGCCTTCGTCTCGCGGCTGCTGGAGGAAGACGGCATTTTCTGGTTC
TTCACCCATGCCGCCGGCAAGCACACCCTGGTGCTGGCCGACAGCAACGACGCCTTCCCGCCGATTCCCAAC
GGCCCGCAAGTGGCCTACCTGGGCCAAGGAATCGGCGTGCGCGAGTTGCAGGGCGTGCGTTCGGCGCAGTAC
AGCCTCCAGGCGGTATCCGGGACCTACAGCGCCACCGACTACGAGTTCACCACCCCGAGCACCTCGCTGTAC
TCCCAGGCCGAGGCGGTCTCCGGCGCCGCCGGCGTCTACCAGCACCCCGGCGGCTACACCGCCAAGGCCCAG
GGCGACAGCCTGACCAAGCAACGCATCGACGGCCTGCGCAGCCAGGAGACGCGCCTGATCGGCGAGAGCGAC
TGCCGCTGGCTGGTGCCCGGCCACTGGTTCACCCTCAGCGGGCATGACGACGATTCGCTGAATATCGACTGG
GTGCTGACCTCGGTCACCCATGACGCCAGTCACGCGCACTACCGCAACCGCTTCGAGGCGATCCCCAAGGCC
ACCGCCTACCGCCCCGCGCGGGTCACGCCCAAGCCACGCATGCACACCCAGACCGCCCTGGTGGTGGGCAAG
GCCGGCGAGGAGATCTGGACCGACCAGTACGGCCGGATCAAGATCCAGTTCCCCTGGGACCGCGACGGCAAG
AACGACGAGACCTCCTCCTGCTGGGTGCGCGTGGTGCTGCCCTGGAGCGGCAAGGGCTTCGGCATGCAGTTC
GTGCCGCGCATCGGCCAGGAAGTGATCGTCACCTTCATCGACGGCGACCCGGACCGCCCGCTGGTCACCGGC
TGCGTCTACAACGGCGACAACGCCCTGCCCTACGCGCTGCCGGACAACCAGACGCAGTCCGGGATCAAGACC
AACTCGTCGAAGGGCGGCGGCGGTTTCAACGAGCTGCGCTTCGAGGACAAGAAGGACGCCGAGGAAGTCTTC
CTCCAGGCGCAGAAGGACCTCAACGTCAACGTGCTCAACGACAGCACCGCCAGCATCGGCCACGACGAGACC
CTGACGGTGCAGAACGCCCGCACCCGCACGGTGAAGGAAGGCGACGAGACCGTCACCCTGGAGAAAGGCAAG
CGCAGCGTGACCATCCAGACCGGCAGCGACAGTCTGGATGTGAAGGACACGCGCACGGTGACGGTGGGCGCC
GACCAGACCCACAGCACCGGCGGCAACTACAGCCACAAGGTCAGCGGCGACTTCGAGCTGACGGTGGACGGC
AACCTGACCATCAAGGTCAGCGGCACCCTCGCCCTGCAGAGCGGCGGCAGCCTGACCCTGAAGAGCGACGCC
GACCTCGCCGCCCAGGCCGGCACCTCGCTGACCAGCAAGGCCGGGACGTCGCTGACCAACCAGGCCGGCACC
TCCCTCACCAACAAGGCCGGCACCAGCCTGACCAACGATGCCGGCGTCAGCCTGACCAACAAGGCCGGCGCC
GAACAGACGGTGGACGGCGGCGGCATGCTGACCATCAAGGGCGGTCTGGTAAAGGTCAACTGA
Translation:
MPRPTDSNTSLSLTASALAALFPERLAGEERLNALPGWELLGYSASPLALDGAIATHLTATLHNDADQRPLD
GLVAEIRQLPGDASAERYQVLLRPWLWWLTLASNNRVFQNLATSDIVTQVFDQHGFSDYQLQLSGSYQPREY
CVQYGESDLAFVSRLLEEDGIFWFFTHAAGKHTLVLADSNDAFPPIPNGPQVAYLGQGIGVRELQGVRSAQY
SLQAVSGTYSATDYEFTTPSTSLYSQAEAVSGAAGVYQHPGGYTAKAQGDSLTKQRIDGLRSQETRLIGESD
CRWLVPGHWFTLSGHDDDSLNIDWVLTSVTHDASHAHYRNRFEAIPKATAYRPARVTPKPRMHTQTALVVGK
AGEEIWTDQYGRIKIQFPWDRDGKNDETSSCWVRVVLPWSGKGFGMQFVPRIGQEVIVTFIDGDPDRPLVTG
CVYNGDNALPYALPDNQTQSGIKTNSSKGGGGFNELRFEDKKDAEEVFLQAQKDLNVNVLNDSTASIGHDET
LTVQNARTRTVKEGDETVTLEKGKRSVTIQTGSDSLDVKDTRTVTVGADQTHSTGGNYSHKVSGDFELTVDG
NLTIKVSGTLALQSGGSLTLKSDADLAAQAGTSLTSKAGTSLTNQAGTSLTNKAGTSLTNDAGVSLTNKAGA
EQTVDGGGMLTIKGGLVKVN*
AnnotationID:386GeneID:377
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 16:04:20
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA2373
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:757




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:17899




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32916




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:377_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:377
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
631
                           PA2373_tr
                           translation of PA2373
                           668
                           95.95
                           97.45
                           0
                           3341.0
     

     
     
29352
                           gb|AAG05761.1|AE004663_7
                           (AE004663) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           668
                           95.95
                           97.45
                           0
                           3341.0
     

     
     
29353
                           gb|AAQ73909.1|
                           (AY293288) Vgr-like protein [Pectobacterium carotovorum subsp. carotovorum]
                           712
                           15.73
                           23.03
                           436
                           452.0
     

     






      

          
GC ORFID: 43379How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2373Glimmer Score: 

          
Start: 1934326Stop: 1936332

          
Length: 2007


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2373 translation of PA2373Homolog Bit Score 1291.0

          
Other Homologs:  t_PA2373 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCCCCGTCCCACCGATAGCAATACCAGCCTCTCCCTGACCGCCTCGGCGCTGGCAGCCCTGTTCCCGGAG 
CGTCTGGCCGGGGAAGAACGCCTGAACGCACTGCCCGGTTGGGAACTGCTGGGCTACAGCGCCAGCCCCTTA 
GCCCTGGACGGCGCAATCGCCACCCATCTCACCGCCACCCTGCACAACGACGCCGACCAGCGTCCGCTCGAC 
GGCCTGGTCGCGGAGATCCGCCAACTCCCCGGCGATGCCAGCGCCGAGCGCTACCAGGTGCTGTTGCGCCCC 
TGGCTCTGGTGGCTGACGCTGGCCAGCAACAACCGGGTGTTCCAGAACCTGGCCACCAGCGACATCGTCACC 
CAGGTCTTCGACCAGCACGGCTTCAGCGACTACCAGTTGCAGCTCAGCGGCAGCTACCAGCCCCGCGAATAC 
TGCGTGCAGTACGGCGAGAGCGACCTTGCCTTCGTCTCGCGGCTGCTGGAGGAAGACGGCATTTTCTGGTTC 
TTCACCCATGCCGCCGGCAAGCACACCCTGGTGCTGGCCGACAGCAACGACGCCTTCCCGCCGATTCCCAAC 
GGCCCGCAAGTGGCCTACCTGGGCCAAGGAATCGGCGTGCGCGAGTTGCAGGGCGTGCGTTCGGCGCAGTAC 
AGCCTCCAGGCGGTATCCGGGACCTACAGCGCCACCGACTACGAGTTCACCACCCCGAGCACCTCGCTGTAC 
TCCCAGGCCGAGGCGGTCTCCGGCGCCGCCGGCGTCTACCAGCACCCCGGCGGCTACACCGCCAAGGCCCAG 
GGCGACAGCCTGACCAAGCAACGCATCGACGGCCTGCGCAGCCAGGAGACGCGCCTGATCGGCGAGAGCGAC 
TGCCGCTGGCTGGTGCCCGGCCACTGGTTCACCCTCAGCGGGCATGACGACGATTCGCTGAATATCGACTGG 
GTGCTGACCTCGGTCACCCATGACGCCAGTCACGCGCACTACCGCAACCGCTTCGAGGCGATCCCCAAGGCC 
ACCGCCTACCGCCCCGCGCGGGTCACGCCCAAGCCACGCATGCACACCCAGACCGCCCTGGTGGTGGGCAAG 
GCCGGCGAGGAGATCTGGACCGACCAGTACGGCCGGATCAAGATCCAGTTCCCCTGGGACCGCGACGGCAAG 
AACGACGAGACCTCCTCCTGCTGGGTGCGCGTGGTGCTGCCCTGGAGCGGCAAGGGCTTCGGCATGCAGTTC 
GTGCCGCGCATCGGCCAGGAAGTGATCGTCACCTTCATCGACGGCGACCCGGACCGCCCGCTGGTCACCGGC 
TGCGTCTACAACGGCGACAACGCCCTGCCCTACGCGCTGCCGGACAACCAGACGCAGTCCGGGATCAAGACC 
AACTCGTCGAAGGGCGGCGGCGGTTTCAACGAGCTGCGCTTCGAGGACAAGAAGGACGCCGAGGAAGTCTTC 
CTCCAGGCGCAGAAGGACCTCAACGTCAACGTGCTCAACGACAGCACCGCCAGCATCGGCCACGACGAGACC 
CTGACGGTGCAGAACGCCCGCACCCGCACGGTGAAGGAAGGCGACGAGACCGTCACCCTGGAGAAAGGCAAG 
CGCAGCGTGACCATCCAGACCGGCAGCGACAGTCTGGATGTGAAGGACACGCGCACGGTGACGGTGGGCGCC 
GACCAGACCCACAGCACCGGCGGCAACTACAGCCACAAGGTCAGCGGCGACTTCGAGCTGACGGTGGACGGC 
AACCTGACCATCAAGGTCAGCGGCACCCTCGCCCTGCAGAGCGGCGGCAGCCTGACCCTGAAGAGCGACGCC 
GACCTCGCCGCCCAGGCCGGCACCTCGCTGACCAGCAAGGCCGGGACGTCGCTGACCAACCAGGCCGGCACC 
TCCCTCACCAACAAGGCCGGCACCAGCCTGACCAACGATGCCGGCGTCAGCCTGACCAACAAGGCCGGCGCC 
GAACAGACGGTGGACGGCGGCGGCATGCTGACCATCAAGGGCGGTCTGGTAAAGGTCAACTGA