ViewGene
Locus Name:
GeneID:
Location:

GeneID:3769
TrivialName: PA14_16350
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16350
PAO1 Ortholog Locus:PA3714
Sequence Length:642
Protein Length:213
Start: 1397660
Stop: 1397019
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07101.1|AE004790_6 (AE004790) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 213/213 (100%), Positives = 213/213 (100%)
Sequence:
ATGAAAACACGCGTCATCCTCGTCGACGACCACGCCCTCACCCTGATCGGCATGCGCTATCTGCTGAGTGCG
TACGACGACCTGCGGATCGTCGCCCAGGCCCAGGACGCCGATGGCTTGCTGGCGCAGCTCGAAGCGCACCCC
TGCGACCTGCTGATCACCGACCTGATGATGCCCGGCAGCCAGCAGGCCGACGGCTTGCGCCTGGTGCAGAAG
GTCCGGCGGCGCTATCCGGACCTGCCGATCATCGTCGTCACCATGCTCGGCAACCCGGCACTCGTTTCATCC
CTGCTCAAGCTGGGCATTCACGGCCTGGTGAGCAAACGCGGCATGCTCGACGATCTGCCCAAGGCGATCCGC
CACGCCGGCCGTCGACCATTCATCTCGCGCTCCATCGCACACCTGCTGGAAGTGGGCGAAGCCGAGCACGGC
AAGCCGCTGGCCAGCCTCGAACAACTCACCCCGCGCGAAGTGGAAGTGCTGCGCCTGTACGGCAGCGGCCTG
GCGGTCGGGGAAATCGCCATCCGACTGTGCCGCAGCAAGCAGACCATCAGCGCGCAAAAGAGCAGCGCCATG
CGCAAGCTTGGCCTGGACAGCAATGCCGGACTCTTTATCTACATCCGGGAAAACGGCCTGGCCTGA
Translation:
MKTRVILVDDHALTLIGMRYLLSAYDDLRIVAQAQDADGLLAQLEAHPCDLLITDLMMPGSQQADGLRLVQK
VRRRYPDLPIIVVTMLGNPALVSSLLKLGIHGLVSKRGMLDDLPKAIRHAGRRPFISRSIAHLLEVGEAEHG
KPLASLEQLTPREVEVLRLYGSGLAVGEIAIRLCRSKQTISAQKSSAMRKLGLDSNAGLFIYIRENGLA*
AnnotationID:3776GeneID:3769
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:39
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA3714
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG2197
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55005.1| (AE016861) DNA-binding response regulator, LuxR family [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 208

 Score =  189 bits (480), Expect = 1e-47
 Identities = 101/208 (48%), Positives = 143/208 (68%), Gaps = 1/208 (0%)

>emb|CAD52874.1| (AJ510203) Pvp response regulator [Photorhabdus luminescens subsp.
           laumondii]
          Length = 208

 Score =  160 bits (405), Expect = 5e-39
 Identities = 87/215 (40%), Positives = 139/215 (64%), Gaps = 12/215 (5%)

>emb|CAC90056.1| (AJ414147) probable two component response regulator component B
           [Yersinia pestis CO92]
          Length = 217

 Score =  153 bits (386), Expect = 8e-37
 Identities = 88/205 (42%), Positives = 130/205 (63%), Gaps = 7/205 (3%)






 
Structural Features:
OG2197, CitB, Response regulator containing a CheY-like receiver domain 
and an HTH DNA-binding domain 
[Signal transduction mechanisms / Transcription]
CD-Length = 211 residues,  98.1% aligned
Score =  157 bits (397), Expect = 3e-39
Identities = 71/210 (33%), Positives = 107/210 (50%), Gaps = 4/210 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7541




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24683




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31837




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3769_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3769
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5985
                           PA3714_tr
                           translation of PA3714
                           213
                           99.99
                           99.99
                           0
                           1056.0
     

     
     
167394
                           gb|AAG07101.1|AE004790_6
                           (AE004790) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           213
                           99.99
                           99.99
                           0
                           1056.0
     

     
     
167395
                           gb|AAO55005.1|
                           (AE016861) DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000]
                           216
                           48.14
                           67.59
                           11
                           483.0
     

     
     
167396
                           emb|CAE14578.1|
                           (BX571866) Two-component response regulator BvgR protein [Photorhabdus luminescens subsp. laumondii TTO1]
                           217
                           40.55
                           64.51
                           13
                           417.0
     

     
     
167397
                           emb|CAD52874.1|
                           (AJ510203) Pvp response regulator [Photorhabdus luminescens subsp. laumondii]
                           217
                           40.55
                           64.51
                           13
                           417.0
     

     






      

          
GC ORFID: 46771How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3714Glimmer Score: 

          
Start: 3556277Stop: 3556918

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3714 translation of PA3714Homolog Bit Score 411.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4830 (ORF: BLASTX 189.0), t_PA4080 (ORF: BLASTX 146.0), t_PA3714 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAAAACACGCGTCATCCTCGTCGACGACCACGCCCTCACCCTGATCGGCATGCGCTATCTGCTGAGTGCG 
TACGACGACCTGCGGATCGTCGCCCAGGCCCAGGACGCCGATGGCTTGCTGGCGCAGCTCGAAGCGCACCCC 
TGCGACCTGCTGATCACCGACCTGATGATGCCCGGCAGCCAGCAGGCCGACGGCTTGCGCCTGGTGCAGAAG 
GTCCGGCGGCGCTATCCGGACCTGCCGATCATCGTCGTCACCATGCTCGGCAACCCGGCACTCGTTTCATCC 
CTGCTCAAGCTGGGCATTCACGGCCTGGTGAGCAAACGCGGCATGCTCGACGATCTGCCCAAGGCGATCCGC 
CACGCCGGCCGTCGACCATTCATCTCGCGCTCCATCGCACACCTGCTGGAAGTGGGCGAAGCCGAGCACGGC 
AAGCCGCTGGCCAGCCTCGAACAACTCACCCCGCGCGAAGTGGAAGTGCTGCGCCTGTACGGCAGCGGCCTG 
GCGGTCGGGGAAATCGCCATCCGACTGTGCCGCAGCAAGCAGACCATCAGCGCGCAAAAGAGCAGCGCCATG 
CGCAAGCTTGGCCTGGACAGCAATGCCGGACTCTTTATCTACATCCGGGAAAACGGCCTGGCCTGA