ViewGene
Locus Name:
GeneID:
Location:

GeneID:3768
TrivialName: PA14_23890
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23890
PAO1 Ortholog Locus:PA3110
Sequence Length:648
Protein Length:215
Start: 2076891
Stop: 2077538
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06498.1|AE004735_5 (AE004735) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 211/219 (96%), Positives = 212/219 (96%), Gaps = 4/219 (1%)
Sequence:
ATGGCCTTGCTGGAAAGAGGGCTGAAGCAGCGCATCGTCGGGGCGTTGGTGCTGATCGCCCTGGCGGTGATC
TTCCTGCCGATGCTGTTCACCCGCGAAGACGAGTCGCGCCAGGTCGTGGTGGAAGCGCCGCCGCGCCCGCAA
GCGCCGGCCATGCCCAGTGTCGAGGTGCAGCCGACCGAGGTGCCGGAACTGCAGCCCGGCGAAGAAGACATC
GCTCCCGAGATCGTCGAGGAAGGCTCCCCGGCCGCCGCCGGCCAGCCCAGCCAGCCGATCGGCGGCCTGCCG
GCGACCCCGCCGCCTGCCCAGACCCAGGCGCCGGCCGCCAGCCCGCCGCCAAGCCAGCCGCAACCGCCCGCT
GCGCCGCCGAGCCCGCCGCCCGCGGAGAAGCGCCTGGACGCCAACAACCTGCCGCAGAGCTGGTCGGTACAG
CTTGCCAGCCTGTCCAACCGGGCGCGCGCCGAGGAACTGCAGAAGACCCTGCGCTCCCAGGGCTACAACGCC
TACATCCGCAGTTTCGACGGGATGAACCGGGTCTTCGTCGGGCCGGTGATCCAGCGCGCCGAGGCGGATCGC
CTGCGCGACCAGTTGAGCAAGCAGCAGAAGCTCAACGGCTTCGTCGTGCGCTTCCAGCCGGAACGCGGTTGA
Translation:
MALLERGLKQRIVGALVLIALAVIFLPMLFTREDESRQVVVEAPPRPQAPAMPSVEVQPTEVPELQPGEEDI
APEIVEEGSPAAAGQPSQPIGGLPATPPPAQTQAPAASPPPSQPQPPAAPPSPPPAEKRLDANNLPQSWSVQ
LASLSNRARAEELQKTLRSQGYNAYIRSFDGMNRVFVGPVIQRAEADRLRDQLSKQQKLNGFVVRFQPERG*
AnnotationID:3775GeneID:3768
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 06:06:22
Gene Name:
Confidence Code:3
GeneProduct:putative DedD protein
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(6) Cell division
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3147
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7539




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24681




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32414




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3768_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3768
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5984
                           PA3110_tr
                           translation of PA3110
                           219
                           96.34
                           96.80
                           4
                           1059.0
     

     
     
167390
                           gb|AAG06498.1|AE004735_5
                           (AE004735) hypothetical protein PA3110 [Pseudomonas aeruginosa PAO1]
                           219
                           96.34
                           96.80
                           4
                           1059.0
     

     
     
167391
                           dbj|BAB13797.1|
                           (AB031231) DedD [Pseudomonas aeruginosa]
                           219
                           96.34
                           96.80
                           4
                           1059.0
     

     
     
167392
                           gb|AAO57282.1|
                           (AE016869) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           226
                           60.17
                           69.46
                           21
                           636.0
     

     
     
167393
                           gb|AAN67612.1|AE016391_3
                           (AE016781) conserved hypothetical protein [Pseudomonas putida KT2440]
                           222
                           59.90
                           73.42
                           15
                           627.0
     

     






      

          
GC ORFID: 46770How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3110Glimmer Score: 

          
Start: 2877040Stop: 2876393

          
Length: 648


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3110 translation of PA3110Homolog Bit Score 411.0

          
Other Homologs:  psyr_15may02_Scaffold7_revised_gene7132 (ORF: BLASTX 240.0), t_PA3110 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCCTTGCTGGAAAGAGGGCTGAAGCAGCGCATCGTCGGGGCGTTGGTGCTGATCGCCCTGGCGGTGATC 
TTCCTGCCGATGCTGTTCACCCGCGAAGACGAGTCGCGCCAGGTCGTGGTGGAAGCGCCGCCGCGCCCGCAA 
GCGCCGGCCATGCCCAGTGTCGAGGTGCAGCCGACCGAGGTGCCGGAACTGCAGCCCGGCGAAGAAGACATC 
GCTCCCGAGATCGTCGAGGAAGGCTCCCCGGCCGCCGCCGGCCAGCCCAGCCAGCCGATCGGCGGCCTGCCG 
GCGACCCCGCCGCCTGCCCAGACCCAGGCGCCGGCCGCCAGCCCGCCGCCAAGCCAGCCGCAACCGCCCGCT 
GCGCCGCCGAGCCCGCCGCCCGCGGAGAAGCGCCTGGACGCCAACAACCTGCCGCAGAGCTGGTCGGTACAG 
CTTGCCAGCCTGTCCAACCGGGCGCGCGCCGAGGAACTGCAGAAGACCCTGCGCTCCCAGGGCTACAACGCC 
TACATCCGCAGTTTCGACGGGATGAACCGGGTCTTCGTCGGGCCGGTGATCCAGCGCGCCGAGGCGGATCGC 
CTGCGCGACCAGTTGAGCAAGCAGCAGAAGCTCAACGGCTTCGTCGTGCGCTTCCAGCCGGAACGCGGTTGA