ViewGene
Locus Name:
GeneID:
Location:

GeneID:3767
TrivialName: PA14_31750
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_31750
PAO1 Ortholog Locus:PA2537
Sequence Length:630
Protein Length:209
Start: 2761652
Stop: 2762281
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05925.1|AE004681_7 (AE004681) probable acyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 203/209 (97%), Positives = 209/209 (100%)
Sequence:
ATGCTCGAATCAGTCGTCGCCTATGGCATCATCGCCGGCGCCCGCGCCATCACCGGCTTGCGCAGCCTCTGG
CTGGGCACTACGCCGATCCCCAAGCAACGCATCTATTACGCCAACCACAGTAGCCATGGCGACTTCGTCCTG
CTCTGGGCCTCGTTGCCGCCGGAGGTGCGGCGGCGTACCCGGCCGGTGGCGGGCGCCGACTACTGGAACAAG
GCCGGCCTGCGCAGCTACGTGATCAACAAGGTGTTCAACGGCGTGCTGGTCGACCGCcagCGCagCGATgcc
aatgccaatCCGCTCGAACCCCTCGACCGCGCCCTGGACGGCGGCGATTCGCTGATCATCTTCCCcaaGGGC
ACCCGCAACCTgaacaaCaaGGTCAAGCTGTTGCCATTCAAGAGCGGTATCTACCACCTGTCCCTGGCCCAC
CCGGAGGTCGAGCTGGTGCCGGTCTGGCTGGCCAACCTCAACCGGGTCATGCCCAAGGGCCGCATGCTGCCG
TTGCCGCTGCTCTGCACCCTGAGCTTCGGCAAGCCGCTGGTCGCCACGGCGGAAGAGGGCAAGGAGGCGTTC
CTCGAACGAGCGCGCATGGCCCTGCTGGACCTGGCGCCGGAAGAGGAGGCCTGA
Translation:
MLESVVAYGIIAGARAITGLRSLWLGTTPIPKQRIYYANHSSHGDFVLLWASLPPEVRRRTRPVAGADYWNK
AGLRSYVINKVFNGVLVDRQRSDANANPLEPLDRALDGGDSLIIFPKGTRNLNNKVKLLPFKSGIYHLSLAH
PEVELVPVWLANLNRVMPKGRMLPLPLLCTLSFGKPLVATAEEGKEAFLERARMALLDLAPEEEA*
AnnotationID:3774GeneID:3767
AnnotatorUID: diggins
Modification Date/Time: 2005-03-06 21:09:00
Gene Name:
Confidence Code:3
GeneProduct:putative acyltransferase
Cell Localization:()
Synonyms:PA2537
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(13) Fatty acid and phospholipid metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0204,smart00563
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO58959.1| (AE016876) acyltransferase, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 206

 Score =  286 bits (733), Expect = 4e-77
 Identities = 142/206 (68%), Positives = 167/206 (81%), Gaps = 2/206 (0%)

>gb|AAM39821.1| (AE012147) acyltransferase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 210

 Score =  237 bits (605), Expect = 3e-62
 Identities = 113/207 (54%), Positives = 148/207 (71%), Gaps = 2/207 (0%)

>gb|AAM35409.1| (AE011678) acyltransferase [Xanthomonas axonopodis pv. citri str.
           306]
          Length = 210

 Score =  236 bits (601), Expect = 9e-62
 Identities = 112/206 (54%), Positives = 147/206 (71%), Gaps = 2/206 (0%)








 
Structural Features:
COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
CD-Length = 255 residues,  78.8% aligned
Score = 74.6 bits (182), Expect = 8e-15
Identities = 59/208 (28%), Positives = 88/208 (42%), Gaps = 11/208 (5%)

smart00563, PlsC, Phosphate acyltransferases
CD-Length = 118 residues,  99.2% aligned
Score = 65.0 bits (158), Expect = 6e-12
Identities = 42/123 (34%), Positives = 61/123 (49%), Gaps = 6/123 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7537




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24679




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33097




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3767_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3767
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5983
                           PA2537_tr
                           translation of PA2537
                           209
                           97.12
                           99.99
                           0
                           1057.0
     

     
     
167383
                           gb|AAG05925.1|AE004681_7
                           (AE004681) probable acyltransferase [Pseudomonas aeruginosa PAO1]
                           209
                           97.12
                           99.99
                           0
                           1057.0
     

     
     
167384
                           gb|AAO58959.1|
                           (AE016876) acyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           209
                           67.94
                           79.90
                           3
                           731.0
     

     
     
167385
                           gb|AAM39821.1|
                           (AE012147) acyltransferase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           212
                           54.24
                           70.75
                           5
                           606.0
     

     
     
167386
                           gb|AAM35409.1|
                           (AE011678) acyltransferase [Xanthomonas axonopodis pv. citri str. 306]
                           212
                           53.77
                           70.28
                           5
                           602.0
     

     






      

          
GC ORFID: 46769How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2537Glimmer Score: 

          
Start: 2192274Stop: 2191645

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2537 translation of PA2537Homolog Bit Score 411.0

          
Other Homologs:  t_PA2537 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGCTCGAATCAGTCGTCGCCTATGGCATCATCGCCGGCGCCCGCGCCATCACCGGCTTGCGCAGCCTCTGG 
CTGGGCACTACGCCGATCCCCAAGCAACGCATCTATTACGCCAACCACAGTAGCCATGGCGACTTCGTCCTG 
CTCTGGGCCTCGTTGCCGCCGGAGGTGCGGCGGCGTACCCGGCCGGTGGCGGGCGCCGACTACTGGAACAAG 
GCCGGCCTGCGCAGCTACGTGATCAACAAGGTGTTCAACGGCGTGCTGGTCGACCGCcagCGCagCGATgcc 
aatgccaatCCGCTCGAACCCCTCGACCGCGCCCTGGACGGCGGCGATTCGCTGATCATCTTCCCcaaGGGC 
ACCCGCAACCTgaacaaCaaGGTCAAGCTGTTGCCATTCAAGAGCGGTATCTACCACCTGTCCCTGGCCCAC 
CCGGAGGTCGAGCTGGTGCCGGTCTGGCTGGCCAACCTCAACCGGGTCATGCCCAAGGGCCGCATGCTGCCG 
TTGCCGCTGCTCTGCACCCTGAGCTTCGGCAAGCCGCTGGTCGCCACGGCGGAAGAGGGCAAGGAGGCGTTC 
CTCGAACGAGCGCGCATGGCCCTGCTGGACCTGGCGCCGGAAGAGGAGGCCTGA