ViewGene
Locus Name:
GeneID:
Location:

GeneID:3766
TrivialName: PA14_43110
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_43110
PAO1 Ortholog Locus:PA1655
Sequence Length:603
Protein Length:200
Start: 3841622
Stop: 3841020
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05044.1|AE004593_6 (AE004593) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
Identities = 200/200 (100%), Positives = 200/200 (100%)
Sequence:
ATGTACAAGGTCTACGGTGATTACCGTTCGGGCAACTGCTACAAGATCAAGCTGGCCATGTCGCTGCTCGGC
ATCGACTACCAGTGGGTACCGGTGGACATTCTCAAGGGCGAGACCCAGACCCCGGAGTTCCTGGCGAAGAAC
CCCAACGGCAAGATACCGGTGCTGGAGCTGGAGGACGGCAGTTGCCTGTGGGAGTCCAACGCCATCCTCAAC
TTCCTCGCCGACGGCAGCGCCCTGTTGCCCAGCGAACCGCGCCTGCGCACCCAGGTGCTGCAATGGCAATTC
TTCGAGCAATACAGCCATGAGCCCTATGTGGCCGTGGCGCGCTTCATCAAGCTCTACCTCGGCCTCCCGGAA
GCCCGCCGCGCCGAGTTCGAAGAGAAGAAGATCGGCGGCTACAAGGCCCTCGACGTCATGGAGAAACAGCTG
TCGCGCACGCCATTCCTGGTCGGCGAACAGTTCTCCATCGCCGATATCACCCTCTACGCCTACACCCATGTC
GCCCATGAAGGCGGCTTCGACCTGACGGCCTACCCGGCGATCCGCGCGTGGATCAAGCGAGTGGGGGAGGTG
CCGGGGTATGTGGGGATGCTGGATTGA
Translation:
MYKVYGDYRSGNCYKIKLAMSLLGIDYQWVPVDILKGETQTPEFLAKNPNGKIPVLELEDGSCLWESNAILN
FLADGSALLPSEPRLRTQVLQWQFFEQYSHEPYVAVARFIKLYLGLPEARRAEFEEKKIGGYKALDVMEKQL
SRTPFLVGEQFSIADITLYAYTHVAHEGGFDLTAYPAIRAWIKRVGEVPGYVGMLD*
AnnotationID:3773GeneID:3766
AnnotatorUID: danlee
Modification Date/Time: 2005-10-14 14:02:30
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:(1) Cytoplasmic
Synonyms:PA1655
Cell Localization Confidence Code:3
MolecularFunction:
Functional Category:(8) Central intermediary metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:2.5.1.18
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55550.1| (AE016863) glutathione S-transferase family protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 200

 Score =  323 bits (827), Expect = 5e-88
 Identities = 152/200 (76%), Positives = 169/200 (84%)

>gb|AAN67440.1|AE016371_6 (AE016780) glutathione S-transferase family protein [Pseudomonas
           putida KT2440]
          Length = 200

 Score =  318 bits (815), Expect = 1e-86
 Identities = 149/199 (74%), Positives = 171/199 (85%)

>gb|AAM36344.1| (AE011779) glutathione S-transferase [Xanthomonas axonopodis pv.
           citri str. 306]
          Length = 205

 Score =  216 bits (550), Expect = 6e-56
 Identities = 105/195 (53%), Positives = 137/195 (70%)






 
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones]
CD-Length = 211 residues,  93.8% aligned
Score =  151 bits (382), Expect = 5e-38
Identities = 73/200 (36%), Positives = 103/200 (51%), Gaps = 8/200 (4%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7535




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24677




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37189




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3766_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3766
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5982
                           PA1655_tr
                           translation of PA1655
                           200
                           99.99
                           99.99
                           0
                           1056.0
     

     
     
167367
                           gb|AAG05044.1|AE004593_6
                           (AE004593) probable glutathione S-transferase [Pseudomonas aeruginosa PAO1]
                           200
                           99.99
                           99.99
                           0
                           1056.0
     

     
     
167368
                           gb|AAO55550.1|
                           (AE016863) glutathione S-transferase family protein [Pseudomonas syringae pv. tomato str. DC3000]
                           200
                           76.00
                           84.50
                           0
                           827.0
     

     
     
167369
                           gb|AAN67440.1|AE016371_6
                           (AE016780) glutathione S-transferase family protein [Pseudomonas putida KT2440]
                           200
                           74.50
                           85.50
                           0
                           814.0
     

     
     
167370
                           gb|AAM36344.1|
                           (AE011779) glutathione S-transferase [Xanthomonas axonopodis pv. citri str. 306]
                           206
                           50.97
                           66.50
                           7
                           543.0
     

     






      

          
GC ORFID: 46768How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1655Glimmer Score: 

          
Start: 1112287Stop: 1112889

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1655 translation of PA1655Homolog Bit Score 411.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene846 (ORF: BLASTX 326.0), t_PA1655 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTACAAGGTCTACGGTGATTACCGTTCGGGCAACTGCTACAAGATCAAGCTGGCCATGTCGCTGCTCGGC 
ATCGACTACCAGTGGGTACCGGTGGACATTCTCAAGGGCGAGACCCAGACCCCGGAGTTCCTGGCGAAGAAC 
CCCAACGGCAAGATACCGGTGCTGGAGCTGGAGGACGGCAGTTGCCTGTGGGAGTCCAACGCCATCCTCAAC 
TTCCTCGCCGACGGCAGCGCCCTGTTGCCCAGCGAACCGCGCCTGCGCACCCAGGTGCTGCAATGGCAATTC 
TTCGAGCAATACAGCCATGAGCCCTATGTGGCCGTGGCGCGCTTCATCAAGCTCTACCTCGGCCTCCCGGAA 
GCCCGCCGCGCCGAGTTCGAAGAGAAGAAGATCGGCGGCTACAAGGCCCTCGACGTCATGGAGAAACAGCTG 
TCGCGCACGCCATTCCTGGTCGGCGAACAGTTCTCCATCGCCGATATCACCCTCTACGCCTACACCCATGTC 
GCCCATGAAGGCGGCTTCGACCTGACGGCCTACCCGGCGATCCGCGCGTGGATCAAGCGAGTGGGGGAGGTG 
CCGGGGTATGTGGGGATGCTGGATTGA