ViewGene

Locus Name:
GeneID:
Location:

GeneID: 3764

TrivialName: PA14_43570

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_43570

PAO1 Ortholog Locus: PA1620

Sequence Length: 642

Protein Length: 213

Start: 3879706

Stop: 3879065

Strand: -

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG05009.1|AE004589_12 (AE004589) hypothetical protein [Pseudomonas aeruginosa PAO1] Identities = 212/213 (99%), Positives = 212/213 (99%)

Sequence:

ATGCAGGAATTGTCTGTCTTGCTGACCCTGGCGGCGGTGTTCGCCGTCGCCCTGGTCAGCCCCGGTCCCGAT
GTCGCCCTGGTGGTGCGCACGTCCCTGCACCAGGGGCGGCGGGCCGGCCTGGCCAGCGCGCTGGGGCTGGCC
TGCGGGattttcCTGCATACCACCCTGGTGCTGacCGGCGTGTCGCTGCTGCTCAGCCGTACGCCTGTGCTG
TTCGCCATCCTGCAGGCGCTCGGCGCGCTGTACCTGGCCTGGCTCGGCGTCGGCGCGCTGCGCGCCTGGCTG
CGGCGCGGCGACGGCCAGCCGGGCCGGCTCGACGGGGCGCTGCCGCCGTCGCCCCTGGGGCCCTGGCTGCGT
GGGGTGGCGACCAATCTGTTCAATCCCAAGGCGCTGGTGTTCTTCATCGCCTTGCTCGGCAGCCTGATTCCT
GCGCAGATGTCGCTCGGCGGCAAGCTGGCGGTGGCGGCGCTGCTGTTCGGCATGGGCGCCTGCTGGTTCGGC
CTGCTCAGCCTGACCCTTACCCGCCCGGCCCTGCAGGCCCGCCTGTTGCGCGCGGTGCCCTGGCTGGACGCG
GCCTGCGGGGTGGTGTTCCTGCTGGTGGCGGCGGCGATCCTCGAGCATCTCGTCCGCTCTGCCTGA

Translation:

MQELSVLLTLAAVFAVALVSPGPDVALVVRTSLHQGRRAGLASALGLACGIFLHTTLVLTGVSLLLSRTPVL
FAILQALGALYLAWLGVGALRAWLRRGDGQPGRLDGALPPSPLGPWLRGVATNLFNPKALVFFIALLGSLIP
AQMSLGGKLAVAALLFGMGACWFGLLSLTLTRPALQARLLRAVPWLDAACGVVFLLVAAAILEHLVRSA*

AnnotationID:3771 GeneID:3764

AnnotatorUID: diggins

Modification Date/Time: 2005-02-27 10:10:41

Gene Name:

Confidence Code: 3

GeneProduct: putative threonine efflux protein

Cell Localization: ()

Synonyms: PA1620

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (27) Transport of small molecules

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1280

Secondary Functional Category(ies): amino acid biosynthesis and metabolism

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAO09443.1|AE016800_48 (AE016800) Putative threonine efflux protein [Vibrio vulnificus
           CMCP6]
          Length = 223

 Score =  181 bits (460), Expect = 2e-45
 Identities = 103/219 (47%), Positives = 136/219 (62%), Gaps = 14/219 (6%)

>gb|AAN53841.1|AE015521_9 (AE015521) threonine efflux protein, putative [Shewanella
           oneidensis MR-1]
          Length = 234

 Score =  159 bits (403), Expect = 8e-39
 Identities = 90/233 (38%), Positives = 136/233 (58%), Gaps = 27/233 (11%)

Structural Features:

COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  98.1% aligned
Score = 92.6 bits (230), Expect = 3e-20
Identities = 72/208 (34%), Positives = 100/208 (48%), Gaps = 7/208 (3%)

Genomic Context:

Comment:

ReferenceID:7531

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:24673

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:36513

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 3764_cdd.html

URL:

Homologs By Global Alignment

Gene ID:3764

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

5980 PA1620_tr translation of PA1620 213 99.53 99.53 0 1056.0

167361 gb|AAG05009.1|AE004589_12 (AE004589) hypothetical protein PA1620 [Pseudomonas aeruginosa PAO1] 213 99.53 99.53 0 1056.0

167362 dbj|BAC95954.1| (AP005343) putative threonine efflux protein [Vibrio vulnificus YJ016] 228 45.17 60.52 20 470.0

167363 gb|AAO09443.1|AE016800_48 (AE016800) Putative threonine efflux protein [Vibrio vulnificus CMCP6] 228 45.17 59.64 20 465.0

167365 dbj|BAC61273.1| (AP005083) conserved hypothetical protein [Vibrio parahaemolyticus] 219 43.83 62.55 6 443.0

GC ORFID: `46766`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA1620`	Glimmer Score:
Start: `1074203`	Stop: `1074844`
Length: `642`
Start Codon: `ATG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA1620 translation of PA1620`	Homolog Bit Score `411.0`
Other Homologs: `t_PA1620 (ORF: GLIMMER)`
GC ORF Sequence
ATGCAGGAATTGTCTGTCTTGCTGACCCTGGCGGCGGTGTTCGCCGTCGCCCTGGTCAGCCCCGGTCCCGAT GTCGCCCTGGTGGTGCGCACGTCCCTGCACCAGGGGCGGCGGGCCGGCCTGGCCAGCGCGCTGGGGCTGGCC TGCGGGattttcCTGCATACCACCCTGGTGCTGacCGGCGTGTCGCTGCTGCTCAGCCGTACGCCTGTGCTG TTCGCCATCCTGCAGGCGCTCGGCGCGCTGTACCTGGCCTGGCTCGGCGTCGGCGCGCTGCGCGCCTGGCTG CGGCGCGGCGACGGCCAGCCGGGCCGGCTCGACGGGGCGCTGCCGCCGTCGCCCCTGGGGCCCTGGCTGCGT GGGGTGGCGACCAATCTGTTCAATCCCAAGGCGCTGGTGTTCTTCATCGCCTTGCTCGGCAGCCTGATTCCT GCGCAGATGTCGCTCGGCGGCAAGCTGGCGGTGGCGGCGCTGCTGTTCGGCATGGGCGCCTGCTGGTTCGGC CTGCTCAGCCTGACCCTTACCCGCCCGGCCCTGCAGGCCCGCCTGTTGCGCGCGGTGCCCTGGCTGGACGCG GCCTGCGGGGTGGTGTTCCTGCTGGTGGCGGCGGCGATCCTCGAGCATCTCGTCCGCTCTGCCTGA