ViewGene
Locus Name:
GeneID:
Location:

GeneID:3762
TrivialName: PA14_51860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_51860
PAO1 Ortholog Locus:PA0959
Sequence Length:630
Protein Length:209
Start: 4605702
Stop: 4605073
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04348.1|AE004530_1 (AE004530) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/209 (96%), Positives = 204/209 (97%)
Sequence:
CTGTTCGACGTCGCGCTGTATTCATTCGACCGGCATCTTATGGGGCGTTCGGCTGGAGTGGCGCGCCAAGCT
GGGGCGGGCGGATGTGCGGGCTTGCTTTGGCCGGGCGGCGAAGTATCCTGCGCGGCAGTTACGGCGGGTCCC
TTCTCGGAAGGAGGGGCTAAGCTGTCCATGAATGACGGTCGAACAGGAGAGGTCAGTATGTTCGCTTTGGAT
CCCCGGCTGGAGCAGGACACCCTGTTGCTCGGCGACTTTCCCCTCAGCCGCCTGCTGCTGATGAACGATGCC
CGCTATCCGTGGTTCATCCTGGTGCCGAGGCGGGAGGATGTCACCGAGCTGTTCCAGCTCGATGTCGATGAC
CAGCAGGCGCTGTGGCGCGAGGCCACGCTGCTGGCAGAGGTGCTCAAGGACACCTTCCGTGCGGACAAGATG
AATGTCGCTAACCTGGGCAATGTGGTCAGCCAGCTCCACATGCACGTGATCGTCCGGCGACGTGGCGACGAC
GCCTGGCCCGGCCCTGTCTGGGGGCGCCATCCGGCTCAGCCTTATTCTTCCGAGCAGGTCGAGGCGATCCGC
GGCAAGTTGCGGATGGTGCTGACCGACGGCTTCCGTTTTGCCGGGGAGGCCTAG
Translation:
MFDVALYSFDRHLMGRSAGVARQAGAGGCAGLLWPGGEVSCAAVTAGPFSEGGAKLSMNDGRTGEVSMFALD
PRLEQDTLLLGDFPLSRLLLMNDARYPWFILVPRREDVTELFQLDVDDQQALWREATLLAEVLKDTFRADKM
NVANLGNVVSQLHMHVIVRRRGDDAWPGPVWGRHPAQPYSSEQVEAIRGKLRMVLTDGFRFAGEA*
AnnotationID:3769GeneID:3762
AnnotatorUID: danlee
Modification Date/Time: 2004-05-11 16:04:12
Gene Name:
Confidence Code:4
GeneProduct:hypothetical protein
Cell Localization:()
Synonyms:PA0959
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam01230, COG0537
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
pfam01230, HIT, HIT domain. Score: 107, 9e-25
COG0537, Hit, Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family 
hydrolases. Score: 83.9, 1e-17






   
Genomic Context:






   
Comment:


















    ReferenceID:14915




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24669




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3762
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5978
                           PA0959_tr
                           translation of PA0959
                           209
                           96.17
                           97.60
                           0
                           1056.0
     

     
     
167338
                           gb|AAG04348.1|AE004530_1
                           (AE004530) hypothetical protein PA0959 [Pseudomonas aeruginosa PAO1]
                           209
                           96.17
                           97.60
                           0
                           1056.0
     

     
     
167339
                           gb|AAO57445.1|
                           (AE016870) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           210
                           43.80
                           50.47
                           68
                           480.0
     

     
     
167340
                           gb|AAN66831.1|AE016312_2
                           (AE016778) conserved hypothetical protein [Pseudomonas putida KT2440]
                           209
                           40.19
                           51.67
                           70
                           449.0
     

     
     
167341
                           emb|CAE26058.1|
                           (BX572594) conserved unknown protein [Rhodopseudomonas palustris CGA009]
                           214
                           32.24
                           45.32
                           54
                           323.0
     

     






      

          
GC ORFID: 46764How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0959Glimmer Score: 

          
Start: 348205Stop: 348834

          
Length: 630


          
Start Codon: CTGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA0959 translation of PA0959Homolog Bit Score 411.0

          
Other Homologs:  psyr_15may02_Scaffold3_revised_gene4677 (ORF: BLASTX 186.0), t_PA0959 (ORF: GLIMMER)

          
GC ORF Sequence

           
CTGTTCGACGTCGCGCTGTATTCATTCGACCGGCATCTTATGGGGCGTTCGGCTGGAGTGGCGCGCCAAGCT 
GGGGCGGGCGGATGTGCGGGCTTGCTTTGGCCGGGCGGCGAAGTATCCTGCGCGGCAGTTACGGCGGGTCCC 
TTCTCGGAAGGAGGGGCTAAGCTGTCCATGAATGACGGTCGAACAGGAGAGGTCAGTATGTTCGCTTTGGAT 
CCCCGGCTGGAGCAGGACACCCTGTTGCTCGGCGACTTTCCCCTCAGCCGCCTGCTGCTGATGAACGATGCC 
CGCTATCCGTGGTTCATCCTGGTGCCGAGGCGGGAGGATGTCACCGAGCTGTTCCAGCTCGATGTCGATGAC 
CAGCAGGCGCTGTGGCGCGAGGCCACGCTGCTGGCAGAGGTGCTCAAGGACACCTTCCGTGCGGACAAGATG 
AATGTCGCTAACCTGGGCAATGTGGTCAGCCAGCTCCACATGCACGTGATCGTCCGGCGACGTGGCGACGAC 
GCCTGGCCCGGCCCTGTCTGGGGGCGCCATCCGGCTCAGCCTTATTCTTCCGAGCAGGTCGAGGCGATCCGC 
GGCAAGTTGCGGATGGTGCTGACCGACGGCTTCCGTTTTGCCGGGGAGGCCTAG