ViewGene
Locus Name:
GeneID:
Location:

GeneID:3761
TrivialName: PA14_06120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_06120
PAO1 Ortholog Locus:PA0467
Sequence Length:621
Protein Length:206
Start: 540758
Stop: 540138
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03856.1|AE004484_8 (AE004484) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 202/206 (98%), Positives = 203/206 (98%)
Sequence:
ATGAGCGCTACCCATACGCTGTTCTACGCAGCCGCCTCGCCCTTCGTGCGCAAGGTCCTGGTCCTGCTCCAC
GAAACCGGCCAACGCGAGCGCGTGGCGCTCGAGGAAGTCACGCCGACGCCGGTCGCGCCCATCCGGCAGCTC
AACGCCAGCAACCCGGCCGGCAAGATTCCCGCCCTGCGCCTGCCGGACGGCCAGGTGCTGCACGACAGCCGG
GTGATCTGCGACTACTTCGACCAGCAGCACGTCGGCGAACCGCTGATCCCCCGCGAAGGCAGCGCCCGCTGG
CGACGCCTGACCATCGCCTCGCTGGCGGACGCCGTCCTCGACGCCGCGGTGCTGACCCGCTACGAGACCTTC
GTCCGCCCCGAGGAGAAGCGCTGGGACGCCTGGCTCGAGGCACAGCGGGAAAAGATCGCGCGGTCCCTGGCA
TGGCTGGAGAGCGACTGCATCGCCGAACTGCAGGCGCGCTTCGACATCGCCGCCATCGGCGTCGCCTGCGCC
CTGGGCTATCTCGACCTGCGCCAGCCGGAGTGGGACTGGCGCGGCCGCTACCCGCGACTCGCCGCCTGGTTC
GCCGAAGTCAGTCAGCGCCCGTCGATGCAGGCCACCCGCGCCTGA
Translation:
MSATHTLFYAAASPFVRKVLVLLHETGQRERVALEEVTPTPVAPIRQLNASNPAGKIPALRLPDGQVLHDSR
VICDYFDQQHVGEPLIPREGSARWRRLTIASLADAVLDAAVLTRYETFVRPEEKRWDAWLEAQREKIARSLA
WLESDCIAELQARFDIAAIGVACALGYLDLRQPEWDWRGRYPRLAAWFAEVSQRPSMQATRA*
AnnotationID:3768GeneID:3761
AnnotatorUID: diggins
Modification Date/Time: 2005-03-27 08:08:56
Gene Name:
Confidence Code:3
GeneProduct:putative glutathione S-transferase
Cell Localization:()
Synonyms:PA0467
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0625
Secondary Functional Category(ies):posttranslational modification, protein turnover, chaperones
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53992.1| (AE016857) glutathione S-transferase, putative [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 204

 Score =  285 bits (730), Expect = 9e-77
 Identities = 137/200 (68%), Positives = 161/200 (80%)

>gb|AAN65966.1|AE016224_10 (AE016775) glutathione S-transferase family protein [Pseudomonas
           putida KT2440]
          Length = 207

 Score =  278 bits (712), Expect = 1e-74
 Identities = 137/202 (67%), Positives = 164/202 (81%)








 
Structural Features:
COG0625, Gst, Glutathione S-transferase 
[Posttranslational modification, protein turnover, chaperones] 
CD-Length = 211 residues,  95.7% aligned
Score =  101 bits (253), Expect = 4e-23
Identities = 65/207 (31%), Positives = 92/207 (44%), Gaps = 11/207 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7525




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24667




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33776




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3761_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3761
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5977
                           PA0467_tr
                           translation of PA0467
                           206
                           98.05
                           98.54
                           0
                           1058.0
     

     
     
167334
                           gb|AAG03856.1|AE004484_8
                           (AE004484) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           206
                           98.05
                           98.54
                           0
                           1058.0
     

     
     
167335
                           gb|AAO53992.1|
                           (AE016857) glutathione S-transferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           208
                           65.86
                           77.40
                           6
                           727.0
     

     
     
167336
                           gb|AAN65966.1|AE016224_10
                           (AE016775) glutathione S-transferase family protein [Pseudomonas putida KT2440]
                           208
                           65.86
                           78.84
                           3
                           709.0
     

     
     
167337
                           gb|AAK22134.1|
                           (AE005688) glutathione S-transferase family protein [Caulobacter crescentus CB15]
                           211
                           38.38
                           51.18
                           19
                           282.0
     

     






      

          
GC ORFID: 46763How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0467Glimmer Score: 

          
Start: 6342100Stop: 6341480

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0467 translation of PA0467Homolog Bit Score 412.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6631 (ORF: BLASTX 283.0), t_PA0467 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCTACCCATACGCTGTTCTACGCAGCCGCCTCGCCCTTCGTGCGCAAGGTCCTGGTCCTGCTCCAC 
GAAACCGGCCAACGCGAGCGCGTGGCGCTCGAGGAAGTCACGCCGACGCCGGTCGCGCCCATCCGGCAGCTC 
AACGCCAGCAACCCGGCCGGCAAGATTCCCGCCCTGCGCCTGCCGGACGGCCAGGTGCTGCACGACAGCCGG 
GTGATCTGCGACTACTTCGACCAGCAGCACGTCGGCGAACCGCTGATCCCCCGCGAAGGCAGCGCCCGCTGG 
CGACGCCTGACCATCGCCTCGCTGGCGGACGCCGTCCTCGACGCCGCGGTGCTGACCCGCTACGAGACCTTC 
GTCCGCCCCGAGGAGAAGCGCTGGGACGCCTGGCTCGAGGCACAGCGGGAAAAGATCGCGCGGTCCCTGGCA 
TGGCTGGAGAGCGACTGCATCGCCGAACTGCAGGCGCGCTTCGACATCGCCGCCATCGGCGTCGCCTGCGCC 
CTGGGCTATCTCGACCTGCGCCAGCCGGAGTGGGACTGGCGCGGCCGCTACCCGCGACTCGCCGCCTGGTTC 
GCCGAAGTCAGTCAGCGCCCGTCGATGCAGGCCACCCGCGCCTGA