ViewGene
Locus Name:
GeneID:
Location:

GeneID:3760
TrivialName: PA14_67470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_67470
PAO1 Ortholog Locus:PA5109
Sequence Length:603
Protein Length:200
Start: 6024712
Stop: 6024110
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08494.1|AE004923_10 (AE004923) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/200 (99%), Positives = 199/200 (99%)
Sequence:
ATGAGCGCGCCCTGGGAGACCCTGCTCGACTGGTGGTTCGGCACCTCCAGCGATGCCGCCGAGGTGGTTGCC
CAGCGCAACGGCCTGTGGTTCGGCAAGAACGTCTGCCAGGACGCCGATGCCGGCGGCCGTTTCGGCGACCTG
GTGAACCAGGCGCTGGACGGCGGCTTGCAGGAGTGGACGGCCGAGGCCGATGGCTGGCTGGCGTTGATCCTG
TTGCTCGACCAGTTGCCGCGGATGATCTACCGCGACACGCCGCGCGCCTACGCCGGCGACGCCCGAGCGCAA
CGGGTGGTGCGCGAGGGCCTGGAGAAAGGCTTCGACCGCCAGTTGCCGCCGGTGCGCCGGGTGTTCGCCTAC
CTGGTCCTGGAGCACGCCGAGGACCTGCCCAGCCAGGAGCGGGCGGTAGCCTGCTTCCGCGACCTGCGCGAT
CAGGTCGGCGGCAGTGCGCGCCAGCCCTTCGATGACTTCTACGACTATGCCGAGCGGCATCATGCGGTAGTC
GCCCGTTTCGGCCGCTTCCCCCATCGCAACGCCATTCTCGGCCGCCCTTCCAGCGAGGAGGAGACGGCGTTC
CTCAGGGAACCCGGTTCGCGTTTCTGA
Translation:
MSAPWETLLDWWFGTSSDAAEVVAQRNGLWFGKNVCQDADAGGRFGDLVNQALDGGLQEWTAEADGWLALIL
LLDQLPRMIYRDTPRAYAGDARAQRVVREGLEKGFDRQLPPVRRVFAYLVLEHAEDLPSQERAVACFRDLRD
QVGGSARQPFDDFYDYAERHHAVVARFGRFPHRNAILGRPSSEEETAFLREPGSRF*
AnnotationID:3767GeneID:3760
AnnotatorUID: diggins
Modification Date/Time: 2005-03-15 07:07:15
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5109
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7523




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24665




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:34959




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3760_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3760
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5975
                           PA5109_tr
                           translation of PA5109
                           200
                           99.00
                           99.50
                           0
                           1060.0
     

     
     
167325
                           gb|AAG08494.1|AE004923_10
                           (AE004923) hypothetical protein PA5109 [Pseudomonas aeruginosa PAO1]
                           200
                           99.00
                           99.50
                           0
                           1060.0
     

     
     
167326
                           gb|AAN70604.1|AE016703_4
                           (AE016793) conserved hypothetical protein [Pseudomonas putida KT2440]
                           200
                           58.00
                           70.50
                           2
                           596.0
     

     
     
167328
                           emb|CAD55614.1|
                           (X04616) hypothetical protein [Synechococcus sp. PCC 7942]
                           209
                           41.14
                           54.06
                           24
                           363.0
     

     
     
167327
                           dbj|BAC91808.1|
                           (AP006581) glr3867 [Gloeobacter violaceus PCC 7421]
                           203
                           40.39
                           55.17
                           12
                           353.0
     

     






      

          
GC ORFID: 46762How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5109Glimmer Score: 

          
Start: 5288397Stop: 5287795

          
Length: 603


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5109 translation of PA5109Homolog Bit Score 412.0

          
Other Homologs:  t_PA2878 (ORF: BLASTX 127.0), t_PA5109 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGCGCCCTGGGAGACCCTGCTCGACTGGTGGTTCGGCACCTCCAGCGATGCCGCCGAGGTGGTTGCC 
CAGCGCAACGGCCTGTGGTTCGGCAAGAACGTCTGCCAGGACGCCGATGCCGGCGGCCGTTTCGGCGACCTG 
GTGAACCAGGCGCTGGACGGCGGCTTGCAGGAGTGGACGGCCGAGGCCGATGGCTGGCTGGCGTTGATCCTG 
TTGCTCGACCAGTTGCCGCGGATGATCTACCGCGACACGCCGCGCGCCTACGCCGGCGACGCCCGAGCGCAA 
CGGGTGGTGCGCGAGGGCCTGGAGAAAGGCTTCGACCGCCAGTTGCCGCCGGTGCGCCGGGTGTTCGCCTAC 
CTGGTCCTGGAGCACGCCGAGGACCTGCCCAGCCAGGAGCGGGCGGTAGCCTGCTTCCGCGACCTGCGCGAT 
CAGGTCGGCGGCAGTGCGCGCCAGCCCTTCGATGACTTCTACGACTATGCCGAGCGGCATCATGCGGTAGTC 
GCCCGTTTCGGCCGCTTCCCCCATCGCAACGCCATTCTCGGCCGCCCTTCCAGCGAGGAGGAGACGGCGTTC 
CTCAGGGAACCCGGTTCGCGTTTCTGA