ViewGene

Locus Name:
GeneID:
Location:

GeneID:376
TrivialName: PA14_69550
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_69550
PAO1 Ortholog Locus:PA5266
Sequence Length:2043
Protein Length:680
Start: 6205895
Stop: 6203853
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08651.1|AE004939_3 (AE004939) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 638/665 (95%), Positives = 644/665 (96%)
Sequence:
ATGTTCGCAGCAGCCAACCAGACCCATTTCAGCCTCGCCATCGACGgcctcgCCCTCGACCTGCAGGTGCTC
TCCTTCAGCGGCCGCGAAGCCATCAGCCAGCCGTTCGCCTTCGACCTGGAGCTgGTCGGCGAACGCCCCGTG
CCGGACCTCGAAAGCCTGCTGCACAAACCCGCCTTCCTTACCCTCGGGCCCGCCGGCAACGGTATCCACGGC
CTGGTGCGCAGCGCCGGACAGGGCGACTCGGGCAAGCGCCTGACCCGCTACCGCATCACCCTCGTCCCGCAA
CTGGCCTACCTCGCCCAGCGCACCAACCAGCGCATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGGCCGG
GTGCTGGAGGAACACGGCATCCTCGCCGACGCCTACCGCTTCCAGCTCGGCACCCGCTACCCCGAGCGCGAA
TACTGCGTGCAGTACGACGAGAGCGACCTGCAGTTCGTCCAGCGCCTGTGCTGCGAGGAGGGCATCCACTTT
CATTTCCAGCACAGCGCCACGGCGCACCTGCTGGTATTCGGCGACGACCAGACGGTGTTCCCGCGGCTCGCG
CCGGTGGCCTACCAGCAGGACTCCGGCCTGGTCGCCGACCGGCCGGCGGTCAAGCGCTTCGGCGTACGCCTG
GAAACCCGCACCAGCCGCGTCACCCGCCGCGACTACGACTTCGAGAAACCGCGCCTGACGCTGGAAAGCGCC
GCCCGCGGCGAAGCCCGGCCGGACCTCGAGGACTACGACTATCCCGGTCGCTTCGTCGACCGCGAGCGCGGC
AAGCACCTGGCCAGGCGTGCCCTCGAACGGCAGCGCAGCGACTACCGCCTGGCCGAGGGCCGCAGCGACCAA
CCGTTGCTGCTCAGCGGCCACTTCCTGCCGCTGGCCGCCCATCCCCAGGCGGGCTGGAACGACCTCTGGCTG
CTCACCGAGGTGATTCACGAGGGGCGGCAGCCGCAGGTGCTGGAAGAAAGCATCGTCTCCGACACCTCGGCG
AGCCCGGACGACTTCCGGCAGGGTTACCGCAACCGCTTCCAGGCCACGCCCTGGGAGGCGTTCTTCCGTCCC
CCGCTGACACCGCCGAAGCCGCGCATCCTCGGCACGCAGAGCGCGGTGGTGACCGGTCCGAAGGGCGAGGAA
ATCCACTGCGACCGCTACGGTCGGGTGAAGGTGCAATTCCACTGGGATCGCGAGGGCCAGGCCGACGACAGC
AGCAGTTGCTGGTTACGCGTTGCCTCCGGCTGGGCGGGAAGGAACTACGGCGCCATCGCCATCCCGCGGGTC
GGCATGGAGGTGCTGGTGACCTTCCTCGAAGGCGACCCCGACCAGCCGCTGGTCACCGGCTGCCTGTTCCAC
AGGGAACATCCGGTGCCCTACGAACTGCCGGCGCACAAGACCCGCAGCGTCTTCAAGAGCCTCAGCAGCCCT
GGCGGCGGTGGCTACAACGAGCTGCGCATCGAGGACCGCAAGGGCCAGGAGCAGATCTTCGTCCATGCCCAG
CGCGACTGGGACGAAAACATCCAGCACGACCAGAAGATCCGCGTCGGTCACCAACGCCACGACACCGTGGAG
GCGAACAGCTACAGCGAGTTCAAGGCCGAGGAACACCGCACCACCCACGCCGAGCGCAAGGTGGAGGTCCGC
GCCAGCGACCACCTCACCGTAGCCAACGACCAGCACCTGAAGATCGCCAGCGGCCAGTTCGTCGAGGCCGGC
CAGGAGATCCACCTGAGCAGCGGTCTGAAGGTGGTGCTGGAGGCCGGCGCCGAACTGACCCTCAAGGGCGGC
GGCAGCTTCCTCAAGCTCGACGCCAGCGGCGTGACCCTCTCCGGGGCCAACGTCCGGGTCAACTCCGGCGGC
AGCCCGGGCAACGGCAGCGGCGCGGCGCCGCTGTTGCCGGGGCCGCTGCGGCAGGCCGACAGCGACAAGGCC
GGCGCCCTGCTGATCCGCGCGCAGCGCCAGGCATTGCTGCAGAAGAAACCGATCTGCGCCATCTGCGAAGCG
GCCAGGGCGAAAACCGATGCGCACTGA
Translation:
MFAAANQTHFSLAIDGLALDLQVLSFSGREAISQPFAFDLELVGERPVPDLESLLHKPAFLTLGPAGNGIHG
LVRSAGQGDSGKRLTRYRITLVPQLAYLAQRTNQRIFQHLTVPQIVGRVLEEHGILADAYRFQLGTRYPERE
YCVQYDESDLQFVQRLCCEEGIHFHFQHSATAHLLVFGDDQTVFPRLAPVAYQQDSGLVADRPAVKRFGVRL
ETRTSRVTRRDYDFEKPRLTLESAARGEARPDLEDYDYPGRFVDRERGKHLARRALERQRSDYRLAEGRSDQ
PLLLSGHFLPLAAHPQAGWNDLWLLTEVIHEGRQPQVLEESIVSDTSASPDDFRQGYRNRFQATPWEAFFRP
PLTPPKPRILGTQSAVVTGPKGEEIHCDRYGRVKVQFHWDREGQADDSSSCWLRVASGWAGRNYGAIAIPRV
GMEVLVTFLEGDPDQPLVTGCLFHREHPVPYELPAHKTRSVFKSLSSPGGGGYNELRIEDRKGQEQIFVHAQ
RDWDENIQHDQKIRVGHQRHDTVEANSYSEFKAEEHRTTHAERKVEVRASDHLTVANDQHLKIASGQFVEAG
QEIHLSSGLKVVLEAGAELTLKGGGSFLKLDASGVTLSGANVRVNSGGSPGNGSGAAPLLPGPLRQADSDKA
GALLIRAQRQALLQKKPICAICEAARAKTDAH*
AnnotationID:385GeneID:376
AnnotatorUID: danlee
Modification Date/Time: 2005-10-08 14:02:56
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA5266
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3501
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
gi|28855799|gb|AAO58858.1|  Rhs element Vgr protein [Pseudomonas syringae pv. tomato str. DC3000]
     Length=680
     Score = 1063 bits (2749),  Expect = 0.0
     Identities = 508/674 (75%), Positives = 583/674 (86%), Gaps = 0/674 (0%)

gi|48732962|ref|ZP_00266705.1|  COG3501: Uncharacterized protein conserved in bacteria 
[Pseudomonas fluorescens PfO-1]
     Length=60
     Score = 1061 bits (2744),  Expect = 0.0
     Identities = 503/675 (74%), Positives = 582/675 (86%), Gaps = 0/675 (0%)
Structural Features:
COG3501, VgrG, Uncharacterized protein conserved in bacteria [Function unknown].
             CD-Length = 550 residues,  99.3% aligned
             Score =  591 bits (1526), Expect = 7e-170
Genomic Context:
Comment:
ReferenceID:755
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17897
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:376

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
627 PA5266_tr translation of PA5266 708 90.25 91.24 45 3337.0
29341 gb|AAG08651.1|AE004939_3 (AE004939) conserved hypothetical protein [Pseudomonas aeruginosa PAO1] 708 90.25 91.24 45 3337.0
29342 gb|AAO58858.1| (AE016875) Rhs element Vgr protein [Pseudomonas syringae pv. tomato str. DC3000] 682 74.78 85.77 4 2743.0
628 PA3294_tr translation of PA3294 693 71.86 81.38 18 2643.0
29343 gb|AAG06682.1|AE004751_8 (AE004751) hypothetical protein PA3294 [Pseudomonas aeruginosa PAO1] 693 71.86 81.38 18 2643.0
GC ORFID: 43378How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA5266Glimmer Score:
Start: 5469582Stop: 5467540
Length: 2043
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA5266 translation of PA5266Homolog Bit Score 1294.0
Other Homologs: t_PA3294 (ORF: BLASTX 1021.0), t_PA5266 (ORF: GLIMMER)
GC ORF Sequence
ATGTTCGCAGCAGCCAACCAGACCCATTTCAGCCTCGCCATCGACGgcctcgCCCTCGACCTGCAGGTGCTC
TCCTTCAGCGGCCGCGAAGCCATCAGCCAGCCGTTCGCCTTCGACCTGGAGCTgGTCGGCGAACGCCCCGTG
CCGGACCTCGAAAGCCTGCTGCACAAACCCGCCTTCCTTACCCTCGGGCCCGCCGGCAACGGTATCCACGGC
CTGGTGCGCAGCGCCGGACAGGGCGACTCGGGCAAGCGCCTGACCCGCTACCGCATCACCCTCGTCCCGCAA
CTGGCCTACCTCGCCCAGCGCACCAACCAGCGCATCTTCCAGCACCTCACGGTGCCGCAGATCGTCGGCCGG
GTGCTGGAGGAACACGGCATCCTCGCCGACGCCTACCGCTTCCAGCTCGGCACCCGCTACCCCGAGCGCGAA
TACTGCGTGCAGTACGACGAGAGCGACCTGCAGTTCGTCCAGCGCCTGTGCTGCGAGGAGGGCATCCACTTT
CATTTCCAGCACAGCGCCACGGCGCACCTGCTGGTATTCGGCGACGACCAGACGGTGTTCCCGCGGCTCGCG
CCGGTGGCCTACCAGCAGGACTCCGGCCTGGTCGCCGACCGGCCGGCGGTCAAGCGCTTCGGCGTACGCCTG
GAAACCCGCACCAGCCGCGTCACCCGCCGCGACTACGACTTCGAGAAACCGCGCCTGACGCTGGAAAGCGCC
GCCCGCGGCGAAGCCCGGCCGGACCTCGAGGACTACGACTATCCCGGTCGCTTCGTCGACCGCGAGCGCGGC
AAGCACCTGGCCAGGCGTGCCCTCGAACGGCAGCGCAGCGACTACCGCCTGGCCGAGGGCCGCAGCGACCAA
CCGTTGCTGCTCAGCGGCCACTTCCTGCCGCTGGCCGCCCATCCCCAGGCGGGCTGGAACGACCTCTGGCTG
CTCACCGAGGTGATTCACGAGGGGCGGCAGCCGCAGGTGCTGGAAGAAAGCATCGTCTCCGACACCTCGGCG
AGCCCGGACGACTTCCGGCAGGGTTACCGCAACCGCTTCCAGGCCACGCCCTGGGAGGCGTTCTTCCGTCCC
CCGCTGACACCGCCGAAGCCGCGCATCCTCGGCACGCAGAGCGCGGTGGTGACCGGTCCGAAGGGCGAGGAA
ATCCACTGCGACCGCTACGGTCGGGTGAAGGTGCAATTCCACTGGGATCGCGAGGGCCAGGCCGACGACAGC
AGCAGTTGCTGGTTACGCGTTGCCTCCGGCTGGGCGGGAAGGAACTACGGCGCCATCGCCATCCCGCGGGTC
GGCATGGAGGTGCTGGTGACCTTCCTCGAAGGCGACCCCGACCAGCCGCTGGTCACCGGCTGCCTGTTCCAC
AGGGAACATCCGGTGCCCTACGAACTGCCGGCGCACAAGACCCGCAGCGTCTTCAAGAGCCTCAGCAGCCCT
GGCGGCGGTGGCTACAACGAGCTGCGCATCGAGGACCGCAAGGGCCAGGAGCAGATCTTCGTCCATGCCCAG
CGCGACTGGGACGAAAACATCCAGCACGACCAGAAGATCCGCGTCGGTCACCAACGCCACGACACCGTGGAG
GCGAACAGCTACAGCGAGTTCAAGGCCGAGGAACACCGCACCACCCACGCCGAGCGCAAGGTGGAGGTCCGC
GCCAGCGACCACCTCACCGTAGCCAACGACCAGCACCTGAAGATCGCCAGCGGCCAGTTCGTCGAGGCCGGC
CAGGAGATCCACCTGAGCAGCGGTCTGAAGGTGGTGCTGGAGGCCGGCGCCGAACTGACCCTCAAGGGCGGC
GGCAGCTTCCTCAAGCTCGACGCCAGCGGCGTGACCCTCTCCGGGGCCAACGTCCGGGTCAACTCCGGCGGC
AGCCCGGGCAACGGCAGCGGCGCGGCGCCGCTGTTGCCGGGGCCGCTGCGGCAGGCCGACAGCGACAAGGCC
GGCGCCCTGCTGATCCGCGCGCAGCGCCAGGCATTGCTGCAGAAGAAACCGATCTGCGCCATCTGCGAAGCG
GCCAGGGCGAAAACCGATGCGCACTGA