ViewGene

Locus Name:
GeneID:
Location:

GeneID:3759
TrivialName: PA14_61470
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_61470
PAO1 Ortholog Locus:PA4646
Sequence Length:639
Protein Length:212
Start: 5484787
Stop: 5485425
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08033.1|AE004878_11 (AE004878) uracil phosphoribosyltransferase [Pseudomonas aeruginosa PAO1]
Identities = 212/212 (100%), Positives = 212/212 (100%)
Sequence:
ATGCCCGTACATGAGATCCGCCACCCCCTCATCCGCCACAAACTGGGCCTGATGCGCCGTGCCGATATCAGC
ACCAAGAACTTCCGCGAACTGGCCCAGGAAGTCGGCGCCCTGCTGACCTACGAGGCGACCAAGGACCTGCCC
CTGGAACAGTACGAAATCCCCGGATGGGCCGGCCCGGTGACGGTGGAGAAGATCTCCGGGAAGAAGATCACC
GTGGTGCCGATCCTGCGCGCCGGCATCGGCATGCTCGACGGCGTGCTCAGCCTGATTCCCGGCGCCAAGGTC
AGCGCGGTCGGCGTCGCCCGCAACGAAGAGACCCTGGAAGCACGCACCTACCTGGAAAAACTGGCGCCGGAC
ATCGCCGAGCGCCGCTCGCTGATCATCGACCCGATGCTCGCCACCGGTGGCTCGATGGTCGCCACCATCGAC
CTGCTGAAGAAGGCCGGCAGCAAGGAAATCCGCGCCATGGTGCTGGTCGCCGCCCCTGAGGGCATCGAGGCG
GTACGCAAGGCCCACCCGGACGTGATCATCTATACCGCCTCGATCGACGAGAAGCTCGACGAGAACGGCTAC
ATCATTCCGGGCCTGGGCGACGCCGGCGACAAGATCTTCGGTACCAAGCAGAAGGAAGCCTGA
Translation:
MPVHEIRHPLIRHKLGLMRRADISTKNFRELAQEVGALLTYEATKDLPLEQYEIPGWAGPVTVEKISGKKIT
VVPILRAGIGMLDGVLSLIPGAKVSAVGVARNEETLEARTYLEKLAPDIAERRSLIIDPMLATGGSMVATID
LLKKAGSKEIRAMVLVAAPEGIEAVRKAHPDVIIYTASIDEKLDENGYIIPGLGDAGDKIFGTKQKEA*
AnnotationID:3766GeneID:3759
AnnotatorUID: diggins
Modification Date/Time: 2005-05-06 18:06:09
Gene Name:upp
Confidence Code:2
GeneProduct:uracil phosphoribosyltransferase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(18) Nucleotide biosynthesis and metabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0035,pfam00156
Secondary Functional Category(ies):
EC Number:2.4.2.9
Status:ACTIVE
Pathway:
Homology:
>gb|AAN66371.1|AE016265_5 (AE016776) uracil phosphoribosyltransferase [Pseudomonas putida
           KT2440]
          Length = 212

 Score =  368 bits (944), Expect = e-101
 Identities = 188/212 (88%), Positives = 199/212 (93%)

>gb|AAN81465.1|AE016764_147 (AE016764) Uracil phosphoribosyltransferase [Escherichia coli
           CFT073]
          Length = 217

 Score =  292 bits (747), Expect = 1e-78
 Identities = 143/208 (68%), Positives = 172/208 (82%)
Structural Features:
COG0035, Upp, Uracil phosphoribosyltransferase 
[Nucleotide transport and metabolism]
CD-Length = 210 residues,  99.5% aligned
Score =  277 bits (710), Expect = 2e-75
Identities = 128/209 (61%), Positives = 160/209 (76%), Gaps = 1/209 (0%)

pfam00156, Pribosyltran, Phosphoribosyl transferase domain.
CD-Length = 137 residues,  83.9% aligned
Score = 57.7 bits (139), Expect = 2e-09
Identities = 29/117 (24%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Genomic Context:
Comment:
ReferenceID:7521
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24663
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31582
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3759_cdd.html
URL:
ReferenceID:33261
Author/Investigator(s): Tu AH, Turnbough CL Jr.
Title: Regulation of upp expression in Escherichia coli by UTP-sensitive selection of transcriptional start sites coupled with UTP-dependent reiterative transcription.
PubMed: 9352914
MedLine:
Source:
J Bacteriol. 1997 Nov;179(21):6665-73.

Erratum in:

    * J Bacteriol 1997 Dec;179(24):7887.
    * J Bacteriol 1998 Sep;180(18):4991.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=9352914
ReferenceID:33262
Author/Investigator(s): Kim JK, Kim JH, Lee SH, Kang Y, Lim JS, Lee HG, Kim SJ, Bai GH, Park YK, Cho SH, Kang SW, Kim YS, Choe IS, Chung TW, Park SN, Kim SH, Ahn JS, Choe YK.
Title: Complete sequence of the UPP gene encoding uracil phosphoribosyltransferase from Mycobacterium bovis BCG.
PubMed: 9161706
MedLine:
Source:
Biochem Mol Biol Int. 1997 May;41(6):1117-24.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=9161706
ReferenceID:33263
Author/Investigator(s): Martinussen J, Glaser P, Andersen PS, Saxild HH.
Title: Two genes encoding uracil phosphoribosyltransferase are present in Bacillus subtilis.
PubMed: 7798145
MedLine:
Source:
J Bacteriol. 1995 Jan;177(1):271-4.
Reference Type:Journal
Data:
URL:ttp://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7798145
ReferenceID:33264
Author/Investigator(s): Martinussen J, Hammer K.
Title: Cloning and characterization of upp, a gene encoding uracil phosphoribosyltransferase from Lactococcus lactis.
PubMed: 7961396
MedLine:
Source:
J Bacteriol. 1994 Nov;176(21):6457-63.
Reference Type:Journal
Data:
URL:http://www.pubmedcentral.nih.gov/articlerender.fcgi?tool=pubmed&pubmedid=7961396
ReferenceID:33265
Author/Investigator(s): Andersen PS, Smith JM, Mygind B.
Title: Characterization of the upp gene encoding uracil phosphoribosyltransferase of Escherichia coli K12.
PubMed: 1371255
MedLine:
Source:
Eur J Biochem. 1992 Feb 15;204(1):51-6.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=1371255
ReferenceID:33266
Author/Investigator(s): Rasmussen UB, Mygind B, Nygaard P.
Title: Purification and some properties of uracil phosphoribosyltransferase from Escherichia coli K12.
PubMed: 3513846
MedLine:
Source:
Biochim Biophys Acta. 1986 Apr 11;881(2):268-75.
Reference Type:Journal
Data:
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=3513846
Homologs By Global Alignment
Gene ID:3759

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5974 PA4646_tr translation of PA4646 212 99.99 99.99 0 1058.0
167218 gb|AAG08033.1|AE004878_11 (AE004878) uracil phosphoribosyltransferase [Pseudomonas aeruginosa PAO1] 212 99.99 99.99 0 1058.0
167219 gb|AAN66371.1|AE016265_5 (AE016776) uracil phosphoribosyltransferase [Pseudomonas putida KT2440] 212 88.67 93.86 0 944.0
167220 gb|AAO54659.1| (AE016859) uracil phosphoribosyltransferase [Pseudomonas syringae pv. tomato str. DC3000] 212 86.79 93.39 0 926.0
167221 emb|CAE41351.1| (BX640414) uracil phosphoribosyltransferase [Bordetella pertussis] [Bordetella pertussis Tohama I] 213 76.52 88.73 1 847.0
GC ORFID: 46761How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4646Glimmer Score:
Start: 4748467Stop: 4749105
Length: 639
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA4646 translation of PA4646Homolog Bit Score 412.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene5076 (ORF: BLASTX 362.0), t_PA4646 (ORF: GLIMMER)
GC ORF Sequence
ATGCCCGTACATGAGATCCGCCACCCCCTCATCCGCCACAAACTGGGCCTGATGCGCCGTGCCGATATCAGC
ACCAAGAACTTCCGCGAACTGGCCCAGGAAGTCGGCGCCCTGCTGACCTACGAGGCGACCAAGGACCTGCCC
CTGGAACAGTACGAAATCCCCGGATGGGCCGGCCCGGTGACGGTGGAGAAGATCTCCGGGAAGAAGATCACC
GTGGTGCCGATCCTGCGCGCCGGCATCGGCATGCTCGACGGCGTGCTCAGCCTGATTCCCGGCGCCAAGGTC
AGCGCGGTCGGCGTCGCCCGCAACGAAGAGACCCTGGAAGCACGCACCTACCTGGAAAAACTGGCGCCGGAC
ATCGCCGAGCGCCGCTCGCTGATCATCGACCCGATGCTCGCCACCGGTGGCTCGATGGTCGCCACCATCGAC
CTGCTGAAGAAGGCCGGCAGCAAGGAAATCCGCGCCATGGTGCTGGTCGCCGCCCCTGAGGGCATCGAGGCG
GTACGCAAGGCCCACCCGGACGTGATCATCTATACCGCCTCGATCGACGAGAAGCTCGACGAGAACGGCTAC
ATCATTCCGGGCCTGGGCGACGCCGGCGACAAGATCTTCGGTACCAAGCAGAAGGAAGCCTGA