ViewGene
Locus Name:
GeneID:
Location:

GeneID:3757
TrivialName: PA14_09690
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_09690
PAO1 Ortholog Locus:PA4196
Sequence Length:645
Protein Length:214
Start: 833184
Stop: 833828
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07583.1|AE004836_2 (AE004836) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
Identities = 210/212 (99%), Positives = 210/212 (99%)
Sequence:
ATGGCTATGCCTGACGAAGCGCTGGTCTACGTGGTCGACGACGACCAGGGCATGCTCGAATCGACGGTCTGG
CTGCTGGAATCGGTCGGTCTCAAGGCACGGCCCTTCACCCAGGGCCGGGACTTCCTCGACGCCTGCGAGGGC
GGCCGCCATGCCTGCGTCCTGCTCGACGTGCGGATGCCCGGCATGGGCGGGCTGAACGTGCAGGACGAACTG
CTGGCGCGCGGCATCGACCTGCCGGTGATCTTCGTCAGCGGCCATGCCGACGTGCCCATCGTGGTGCGCGCC
TTCAAGGCCGGTGCGGTGGATTTCATCGAGAAACCCTACAACGAACAATTGCTGCTCGACAGCGTGCAGCAG
GCCCTCGATCGCCACGCCCGTCGGCGCCGCCACCGCGATCTCGACGCCGGGTTGCGCGAACGCCTGGACAGC
CTCACCCCGCGCGAGCGCGACGTGCTCTTGCCGCTGGTGCGCGGCTATACCAGCCGCGAGGTGGCCGAGCAA
CTGGAAGTCAGCGTGAAGACCGTCGACCTCTACCGCGCGCGGGTGATGAAGCGCATGCAGGCCCAGACCCTG
CCGGAGCTGGTGGGCATGGCCATCGCCGCCGGGCTGGTGGACCCGCTGCGCTTGCGCGAGGACGCCTGA
Translation:
MAMPDEALVYVVDDDQGMLESTVWLLESVGLKARPFTQGRDFLDACEGGRHACVLLDVRMPGMGGLNVQDEL
LARGIDLPVIFVSGHADVPIVVRAFKAGAVDFIEKPYNEQLLLDSVQQALDRHARRRRHRDLDAGLRERLDS
LTPRERDVLLPLVRGYTSREVAEQLEVSVKTVDLYRARVMKRMQAQTLPELVGMAIAAGLVDPLRLREDA*
AnnotationID:3764GeneID:3757
AnnotatorUID: diggins
Modification Date/Time: 2005-04-01 05:05:50
Gene Name:
Confidence Code:3
GeneProduct:putative two-component response regulator
Cell Localization:()
Synonyms:PA4196
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(28) Two-component regulatory systems
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4566
Secondary Functional Category(ies):transcriptional regulators
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN69152.1|AE016549_1 (AE016787) DNA-binding response regulator, LuxR family [Pseudomonas
           putida KT2440]
          Length = 210

 Score =  266 bits (681), Expect = 5e-71
 Identities = 139/206 (67%), Positives = 162/206 (78%)

>emb|CAA39980.1| (X56658) fixJ [Azorhizobium caulinodans]
          Length = 211

 Score =  167 bits (423), Expect = 4e-41
 Identities = 88/202 (43%), Positives = 128/202 (63%)

>dbj|BAC50039.1| (AP005952) two-component response regulator [Bradyrhizobium
           japonicum USDA 110]
          Length = 221

 Score =  164 bits (416), Expect = 3e-40
 Identities = 82/203 (40%), Positives = 130/203 (64%)








 
Structural Features:
COG4566, TtrR, Response regulator [Signal transduction mechanisms]
CD-Length = 202 residues, 100.0% aligned
Score =  255 bits (652), Expect = 4e-69
Identities = 108/202 (53%), Positives = 147/202 (72%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7517




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24659




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:36919




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3757_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3757
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5971
                           PA4196_tr
                           translation of PA4196
                           214
                           98.13
                           98.13
                           0
                           1059.0
     

     
     
166635
                           gb|AAG07583.1|AE004836_2
                           (AE004836) probable two-component response regulator [Pseudomonas aeruginosa PAO1]
                           214
                           98.13
                           98.13
                           0
                           1059.0
     

     
     
166636
                           gb|AAN69152.1|AE016549_1
                           (AE016787) DNA-binding response regulator, LuxR family [Pseudomonas putida KT2440]
                           215
                           66.04
                           75.81
                           6
                           674.0
     

     
     
166637
                           emb|CAA39980.1|
                           (X56658) fixJ [Azorhizobium caulinodans]
                           217
                           41.47
                           60.36
                           9
                           421.0
     

     
     
166640
                           gb|AAO58967.1|
                           (AE016876) DNA-binding response regulator, LuxR family [Pseudomonas syringae pv. tomato str. DC3000]
                           220
                           40.45
                           60.45
                           14
                           401.0
     

     






      

          
GC ORFID: 46759How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4196Glimmer Score: 

          
Start: 4120753Stop: 4120109

          
Length: 645


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4196 translation of PA4196Homolog Bit Score 412.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene4156 (ORF: BLASTX 162.0), t_PA4196 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGGCTATGCCTGACGAAGCGCTGGTCTACGTGGTCGACGACGACCAGGGCATGCTCGAATCGACGGTCTGG 
CTGCTGGAATCGGTCGGTCTCAAGGCACGGCCCTTCACCCAGGGCCGGGACTTCCTCGACGCCTGCGAGGGC 
GGCCGCCATGCCTGCGTCCTGCTCGACGTGCGGATGCCCGGCATGGGCGGGCTGAACGTGCAGGACGAACTG 
CTGGCGCGCGGCATCGACCTGCCGGTGATCTTCGTCAGCGGCCATGCCGACGTGCCCATCGTGGTGCGCGCC 
TTCAAGGCCGGTGCGGTGGATTTCATCGAGAAACCCTACAACGAACAATTGCTGCTCGACAGCGTGCAGCAG 
GCCCTCGATCGCCACGCCCGTCGGCGCCGCCACCGCGATCTCGACGCCGGGTTGCGCGAACGCCTGGACAGC 
CTCACCCCGCGCGAGCGCGACGTGCTCTTGCCGCTGGTGCGCGGCTATACCAGCCGCGAGGTGGCCGAGCAA 
CTGGAAGTCAGCGTGAAGACCGTCGACCTCTACCGCGCGCGGGTGATGAAGCGCATGCAGGCCCAGACCCTG 
CCGGAGCTGGTGGGCATGGCCATCGCCGCCGGGCTGGTGGACCCGCTGCGCTTGCGCGAGGACGCCTGA