ViewGene
Locus Name:
GeneID:
Location:

GeneID:3756
TrivialName: PA14_16280
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16280
PAO1 Ortholog Locus:PA3721
Sequence Length:642
Protein Length:213
Start: 1391485
Stop: 1390844
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07108.1|AE004791_5 (AE004791) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 210/213 (98%), Positives = 210/213 (98%)
Sequence:
ATGAACGATGCGTCCCCCCGTCTGACCGAACGCGGCAGGCAACGCCGCCGCGCCATGCTCGACGCCGCCACC
CAGGCCTTTCTCGAACACGGTTTCGAAGGCACCACCCTGGACATGGTGATTGAACGGGCCGGTGGTTCACGG
GGAACCCTGTACAGCTCCTTCGGCGGCAAGGAAGGCCTGTTTGCCGCGGTGATCGCCCACATGATCGAGGAA
ATCTTCGACGACAGCGCCGATCAGCCGCGCCCCGCCGCCACGCTGAGCGCCACCCTCGAGCATTTCGGCCGG
CGCTTCCTCACCAGCCTGCTCGATCCCCGCTGCCAGAGCCTCTATCGCCTGGTGGTGGCGGAATCTCCGCGG
TTTCCGGCGATCGGCAAGTCCTTCTACGAGCAGGGGCCGCAGCAGAGCTACCTGCTGCTCAGCGAGCGACTG
GTAGCGGTCGCCCCCCACATGGACGAGGAAACGCTCTACGCGGTGGCCTGCCAGTTTCTCGAGATGCTCAAG
GCCGACCTGTTCCTCAAGGCCCTCAGCGTGGCCGACTTCCAGCCGACCATGGCACTGCTGGAAACCCGCCTC
AAGCTGTCGGTGGACATCATCGCCTGCTACCTGGAACACCTGTCGCAGCGCCCCGCGCAGGGCTGA
Translation:
MNDASPRLTERGRQRRRAMLDAATQAFLEHGFEGTTLDMVIERAGGSRGTLYSSFGGKEGLFAAVIAHMIEE
IFDDSADQPRPAATLSATLEHFGRRFLTSLLDPRCQSLYRLVVAESPRFPAIGKSFYEQGPQQSYLLLSERL
VAVAPHMDEETLYAVACQFLEMLKADLFLKALSVADFQPTMALLETRLKLSVDIIACYLEHLSQRPAQG*
AnnotationID:3763GeneID:3756
AnnotatorUID: diggins
Modification Date/Time: 2005-04-22 07:07:35
Gene Name:
Confidence Code:3
GeneProduct:putative transciptional regulator
Cell Localization:()
Synonyms:PA3721
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>emb|CAD17594.1| (AL646078) PROBABLE TRANSCRIPTION REGULATOR PROTEIN [Ralstonia
           solanacearum]
          Length = 209

 Score =  103 bits (257), Expect = 7e-22
 Identities = 71/201 (35%), Positives = 111/201 (55%), Gaps = 13/201 (6%)

>gb|AAF94565.1| (AE004219) transcriptional regulator, TetR family [Vibrio cholerae]
          Length = 200

 Score = 85.9 bits (211), Expect = 1e-16
 Identities = 58/193 (30%), Positives = 93/193 (48%), Gaps = 3/193 (1%)






 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  91.0% aligned
Score = 53.9 bits (127), Expect = 3e-08
Identities = 50/183 (27%), Positives = 72/183 (39%), Gaps = 2/183 (1%)








   
Genomic Context:






   
Comment:


















    ReferenceID:7515




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24657




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31834




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3756_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3756
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5970
                           PA3721_tr
                           translation of PA3721
                           213
                           98.59
                           98.59
                           0
                           1059.0
     

     
     
166634
                           gb|AAG07108.1|AE004791_5
                           (AE004791) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           213
                           98.59
                           98.59
                           0
                           1059.0
     

     






      

          
GC ORFID: 46758How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3721Glimmer Score: 

          
Start: 3562452Stop: 3563093

          
Length: 642


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3721 translation of PA3721Homolog Bit Score 412.0

          
Other Homologs:  t_PA3721 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGATGCGTCCCCCCGTCTGACCGAACGCGGCAGGCAACGCCGCCGCGCCATGCTCGACGCCGCCACC 
CAGGCCTTTCTCGAACACGGTTTCGAAGGCACCACCCTGGACATGGTGATTGAACGGGCCGGTGGTTCACGG 
GGAACCCTGTACAGCTCCTTCGGCGGCAAGGAAGGCCTGTTTGCCGCGGTGATCGCCCACATGATCGAGGAA 
ATCTTCGACGACAGCGCCGATCAGCCGCGCCCCGCCGCCACGCTGAGCGCCACCCTCGAGCATTTCGGCCGG 
CGCTTCCTCACCAGCCTGCTCGATCCCCGCTGCCAGAGCCTCTATCGCCTGGTGGTGGCGGAATCTCCGCGG 
TTTCCGGCGATCGGCAAGTCCTTCTACGAGCAGGGGCCGCAGCAGAGCTACCTGCTGCTCAGCGAGCGACTG 
GTAGCGGTCGCCCCCCACATGGACGAGGAAACGCTCTACGCGGTGGCCTGCCAGTTTCTCGAGATGCTCAAG 
GCCGACCTGTTCCTCAAGGCCCTCAGCGTGGCCGACTTCCAGCCGACCATGGCACTGCTGGAAACCCGCCTC 
AAGCTGTCGGTGGACATCATCGCCTGCTACCTGGAACACCTGTCGCAGCGCCCCGCGCAGGGCTGA