ViewGene
Locus Name:
GeneID:
Location:

GeneID:3755
TrivialName: PA14_34800
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_34800
PAO1 Ortholog Locus:PA2306
Sequence Length:618
Protein Length:205
Start: 3090172
Stop: 3090789
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05694.1|AE004657_1 (AE004657) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 204/205 (99%), Positives = 205/205 (100%)
Sequence:
ATGTCGCTCTCCGTGGATCTGCTGCTGGCGTTCTCCCTGTTCGCCTTCGTCACCTCCGTCACGCCCGGTCCG
AACAACACCATGCTGCTGGCCTCGGGGGTCAACTTCGGTTTCGTCCGCTCCATCCCGCACATCCTCGGGATC
AGTTGCGGCTTCTTCATCATGGTGATGGCGGTGGGCTTCGGCCTGGGCACGGTGTTCGAGGCCTACCCGGTG
CTGTACACCATCCTGCGCTACGTCGGCGCGGCCTACCTGCTGTACCTGGCCTGGAAGATCGCCACCTCCGGC
CCGGCCGGCAACGACCCGGAGGGACGTGGCAAGCCGTTGAGCTACTGGGGCGCGGCGGCGTTCCAGTGGGTC
AACCCGAAGGCCTGGGTGATGGCGGTCGGCGCCATCAGCACCTACACCCCGTTGCAGGGCTACTTCACCAAC
GTGGTGGTGATCTCGACGGTCTTCGCCCTGATCAACGCGCCGACCATCGGAATCTGGGCCGGTTTCGGCAGC
ATGCTGCGCAACGTGCTGCGCGATCCGCGCTGGCTGCGGGTGTTCAACGTAGGGATGGCGCTGCTGTTGGTC
GCGTCGCTGTACCCGATCCTGGCGGAAAATCATTCGGCCTGA
Translation:
MSLSVDLLLAFSLFAFVTSVTPGPNNTMLLASGVNFGFVRSIPHILGISCGFFIMVMAVGFGLGTVFEAYPV
LYTILRYVGAAYLLYLAWKIATSGPAGNDPEGRGKPLSYWGAAAFQWVNPKAWVMAVGAISTYTPLQGYFTN
VVVISTVFALINAPTIGIWAGFGSMLRNVLRDPRWLRVFNVGMALLLVASLYPILAENHSA*
AnnotationID:3762GeneID:3755
AnnotatorUID: diggins
Modification Date/Time: 2005-03-04 12:12:20
Gene Name:
Confidence Code:3
GeneProduct:putative transporter, LysE family
Cell Localization:()
Synonyms:PA2306
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:putative threonine efflux protein
Functional Category Confidence Code:5
COGs:COG1280,pfam01810
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56927.1| (AE016868) transporter, LysE family [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 202

 Score =  323 bits (829), Expect = 3e-88
 Identities = 155/202 (76%), Positives = 179/202 (88%)

>emb|CAE34628.1| (BX640450) putative membrane protein [Bordetella bronchiseptica]
          Length = 219

 Score =  236 bits (601), Expect = 8e-62
 Identities = 113/195 (57%), Positives = 142/195 (72%), Gaps = 1/195 (0%)

>emb|CAC46687.1| (AL591789) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium
           meliloti]
          Length = 197

 Score =  235 bits (600), Expect = 1e-61
 Identities = 114/199 (57%), Positives = 148/199 (74%), Gaps = 5/199 (2%)






 
Structural Features:
COG1280, RhtB, Putative threonine efflux protein 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  98.6% aligned
Score =  109 bits (275), Expect = 2e-25
Identities = 59/205 (28%), Positives = 96/205 (46%), Gaps = 7/205 (3%)

pfam01810, LysE, LysE type translocator. 
CD-Length = 191 residues,  95.3% aligned
Score = 61.4 bits (149), Expect = 7e-11
Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 4/182 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7513




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24655




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32484




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3755_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3755
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5969
                           PA2306_tr
                           translation of PA2306
                           205
                           99.51
                           99.99
                           0
                           1060.0
     

     
     
166619
                           gb|AAG05694.1|AE004657_1
                           (AE004657) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           205
                           99.51
                           99.99
                           0
                           1060.0
     

     
     
166620
                           gb|AAO56927.1|
                           (AE016868) transporter, LysE family [Pseudomonas syringae pv. tomato str. DC3000]
                           205
                           75.60
                           87.31
                           3
                           829.0
     

     
     
166621
                           gb|AAN69008.1|AE016532_10
                           (AE016786) conserved hypothetical protein [Pseudomonas putida KT2440]
                           209
                           67.94
                           78.94
                           4
                           755.0
     

     
     
166624
                           emb|CAC46687.1|
                           (AL591789) HYPOTHETICAL TRANSMEMBRANE PROTEIN [Sinorhizobium meliloti]
                           207
                           55.07
                           71.49
                           12
                           604.0
     

     






      

          
GC ORFID: 46757How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA2306Glimmer Score: 

          
Start: 1863744Stop: 1863127

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA2306 translation of PA2306Homolog Bit Score 412.0

          
Other Homologs:  psyr_15may02_Scaffold9_revised_gene8081 (ORF: BLASTX 323.0), t_PA2306 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCGCTCTCCGTGGATCTGCTGCTGGCGTTCTCCCTGTTCGCCTTCGTCACCTCCGTCACGCCCGGTCCG 
AACAACACCATGCTGCTGGCCTCGGGGGTCAACTTCGGTTTCGTCCGCTCCATCCCGCACATCCTCGGGATC 
AGTTGCGGCTTCTTCATCATGGTGATGGCGGTGGGCTTCGGCCTGGGCACGGTGTTCGAGGCCTACCCGGTG 
CTGTACACCATCCTGCGCTACGTCGGCGCGGCCTACCTGCTGTACCTGGCCTGGAAGATCGCCACCTCCGGC 
CCGGCCGGCAACGACCCGGAGGGACGTGGCAAGCCGTTGAGCTACTGGGGCGCGGCGGCGTTCCAGTGGGTC 
AACCCGAAGGCCTGGGTGATGGCGGTCGGCGCCATCAGCACCTACACCCCGTTGCAGGGCTACTTCACCAAC 
GTGGTGGTGATCTCGACGGTCTTCGCCCTGATCAACGCGCCGACCATCGGAATCTGGGCCGGTTTCGGCAGC 
ATGCTGCGCAACGTGCTGCGCGATCCGCGCTGGCTGCGGGTGTTCAACGTAGGGATGGCGCTGCTGTTGGTC 
GCGTCGCTGTACCCGATCCTGGCGGAAAATCATTCGGCCTGA