ViewGene

Locus Name:
GeneID:
Location:

GeneID:3754
TrivialName: PA14_47950
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_47950
PAO1 Ortholog Locus:PA1257
Sequence Length:645
Protein Length:214
Start: 4268733
Stop: 4269377
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04646.1|AE004555_6 (AE004555) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1]
Identities = 213/214 (99%), Positives = 213/214 (99%)
Sequence:
GTGTTCACCACCAGCCTCACCGCCAACGACCTGCTGTTCCTCCTGCAAGGCGCCTGGACCACCCTCGCCATC
ACCGCCATGGCGATGCTGATCGGCACCCTGCTGGGTGTCGTCTTCGGCCTGCTCCGCGCCCTGCTGCCACGC
GCCAGCCTGCCGCTGGCGGCGCTGCTCGACGTATTCCGCAGCGTGCCGCTGCTGATCCAGTTCGTCCTGCTC
AATTCCTTCAAGAGCATCCTCGGCCTCGACTGGAGCGCCTTCGCCGTGGCCTGCCTGGTGCTCGGCGTGTAC
GCCGCCGCCTACTGCACCGAGGTGGTCCGCGGCGGCGTCCTCTCGGTACCGCCGAGCGTGCGCCGGGCGGCG
CGTTCGCTGGGCCTGAGCTATCGCCAGGACCTGTTCCACATCGTCCTGCCGATGGCCGCCCGGGTGGCCTTC
CCCGGTTGGGTCAACCTGACCCTGTCGGTGATGAAGGACACCTCGCTGGTGCTCTGGATCGGCATCGTCGAA
CTGCTGCGCGCCTCGCAGACCATCGTCACGCGCATCCAGGAACCGCTCTTCGTGCTCTGCATCGCGGGGCTC
GTCTATTACCTCATGAGCTGGGTGGTCGCGCGACTCGGCGCCCGGCTGGAACGGAGATGGCAGCAATGA
Translation:
MFTTSLTANDLLFLLQGAWTTLAITAMAMLIGTLLGVVFGLLRALLPRASLPLAALLDVFRSVPLLIQFVLL
NSFKSILGLDWSAFAVACLVLGVYAAAYCTEVVRGGVLSVPPSVRRAARSLGLSYRQDLFHIVLPMAARVAF
PGWVNLTLSVMKDTSLVLWIGIVELLRASQTIVTRIQEPLFVLCIAGLVYYLMSWVVARLGARLERRWQQ*
AnnotationID:3761GeneID:3754
AnnotatorUID: diggins
Modification Date/Time: 2005-02-22 12:12:00
Gene Name:
Confidence Code:3
GeneProduct:putative amino acid ABC transporter permease
Cell Localization:()
Synonyms:PA1257
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG4160,COG4215
Secondary Functional Category(ies):membrane protein
EC Number:
Status:ACTIVE
Pathway:
Homology:
>emb|CAC48655.1| (AL603642) putative amino acid ABC transporter permease protein
           [Sinorhizobium meliloti]
          Length = 217

 Score =  256 bits (655), Expect = 5e-68
 Identities = 128/213 (60%), Positives = 167/213 (78%), Gaps = 1/213 (0%)

>gb|AAL45474.1| (AE009396) ABC transporter, membrane spanning protein [amino acid]
           [Agrobacterium tumefaciens str. C58 (U. Washington)]
          Length = 217

 Score =  254 bits (648), Expect = 3e-67
 Identities = 122/213 (57%), Positives = 166/213 (77%), Gaps = 1/213 (0%)

Structural Features:
COG4160, ArtM, ABC-type arginine/histidine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 228 residues,  92.1% aligned
Score =  115 bits (290), Expect = 4e-27
Identities = 72/210 (34%), Positives = 111/210 (52%), Gaps = 11/210 (5%)

COG4215, ArtQ, ABC-type arginine transport system, permease component 
[Amino acid transport and metabolism]
CD-Length = 230 residues,  92.6% aligned
Score =  112 bits (282), Expect = 3e-26
Identities = 77/213 (36%), Positives = 109/213 (51%), Gaps = 15/213 (7%)

Genomic Context:
Comment:
ReferenceID:14913
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24653
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:37515
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3754_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3754

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5968 PA1257_tr translation of PA1257 214 99.53 99.53 0 1058.0
166614 gb|AAG04646.1|AE004555_6 (AE004555) probable permease of ABC transporter [Pseudomonas aeruginosa PAO1] 214 99.06 99.53 0 1055.0
166615 emb|CAC48655.1| (AL603642) putative amino acid ABC transporter permease protein [Sinorhizobium meliloti] 217 58.52 76.95 3 652.0
166616 gb|AAL45474.1| (AE009396) ABC transporter, membrane spanning protein [amino acid] [Agrobacterium tumefaciens str. C58 (U. Washington)] 217 55.76 76.49 3 645.0
166617 gb|AAK88770.1| (AE008218) AGR_L_403p [Agrobacterium tumefaciens str. C58 (Cereon)] 217 55.76 76.49 3 645.0
GC ORFID: 46756How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA1257Glimmer Score:
Start: 685176Stop: 684532
Length: 645
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA1257 translation of PA1257Homolog Bit Score 412.0
Other Homologs: t_PA1257 (ORF: GLIMMER)
GC ORF Sequence
GTGTTCACCACCAGCCTCACCGCCAACGACCTGCTGTTCCTCCTGCAAGGCGCCTGGACCACCCTCGCCATC
ACCGCCATGGCGATGCTGATCGGCACCCTGCTGGGTGTCGTCTTCGGCCTGCTCCGCGCCCTGCTGCCACGC
GCCAGCCTGCCGCTGGCGGCGCTGCTCGACGTATTCCGCAGCGTGCCGCTGCTGATCCAGTTCGTCCTGCTC
AATTCCTTCAAGAGCATCCTCGGCCTCGACTGGAGCGCCTTCGCCGTGGCCTGCCTGGTGCTCGGCGTGTAC
GCCGCCGCCTACTGCACCGAGGTGGTCCGCGGCGGCGTCCTCTCGGTACCGCCGAGCGTGCGCCGGGCGGCG
CGTTCGCTGGGCCTGAGCTATCGCCAGGACCTGTTCCACATCGTCCTGCCGATGGCCGCCCGGGTGGCCTTC
CCCGGTTGGGTCAACCTGACCCTGTCGGTGATGAAGGACACCTCGCTGGTGCTCTGGATCGGCATCGTCGAA
CTGCTGCGCGCCTCGCAGACCATCGTCACGCGCATCCAGGAACCGCTCTTCGTGCTCTGCATCGCGGGGCTC
GTCTATTACCTCATGAGCTGGGTGGTCGCGCGACTCGGCGCCCGGCTGGAACGGAGATGGCAGCAATGA