ViewGene
Locus Name:
GeneID:
Location:

GeneID:3753
TrivialName: PA14_54120
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_54120
PAO1 Ortholog Locus:PA0785
Sequence Length:639
Protein Length:212
Start: 4799951
Stop: 4799313
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04174.1|AE004513_6 (AE004513) probable acyl carrier protein phosphodiesterase [Pseudomonas aeruginosa PAO1]
Identities = 210/212 (99%), Positives = 211/212 (99%)
Sequence:
ATGAGTAGAATTCTTGCAGTGCATGCCAGTCCGCGAGGCGAGCGCTCGCAGTCCCGGCGTCTCGCCGAGGTT
TTCCTGGCGGCCTATCGCGAAGCACATCCGCAGGCCCGCGTGGCTCGCCGCGAAGTCGGCCGGGTACCGCTT
CCGGCGGTCACCGAGGCCTTCGTCGCCGCCGCCTTCCATCCCCAGCCGGAACAGCGTTCGCTGGCGATGCAG
GCCGACCTGGCGCTGAGCGACCAACTGGTCGGCGAATTGTTCGACAGCGACCTGCTGGTGATCTCCACGCCG
ATGTACAACTTCAGCGTGCCCAGCGGCCTGAAGGCCTGGATCGACCAGATCGTGCGCCTCGGGGTGACCTTC
GATTTCGTCCTCGACAATGGCGTCGCCCAGTACCGGCCGCTGCTGCGCGGCAAGCGTGCGCTGATCGTCACC
AGTCGCGGTGGCCATGGCTTCGGCCCGGGCGGCGAGAACCAGGCGATGAACCACGCCGATCCCTGGTTGCGC
ACCGCGCTGGGTTTCATCGGCATCGACGAGGTCACGGTGGTCGCGGCGGAAGGCGAGGAATCCGGCGGCAGG
TCCTTCGAGGACTCCTGCGCCGAGGCGGAACAGCGCCTGCTGGCGCTGGCGCAGTCGGCCTGA
Translation:
MSRILAVHASPRGERSQSRRLAEVFLAAYREAHPQARVARREVGRVPLPAVTEAFVAAAFHPQPEQRSLAMQ
ADLALSDQLVGELFDSDLLVISTPMYNFSVPSGLKAWIDQIVRLGVTFDFVLDNGVAQYRPLLRGKRALIVT
SRGGHGFGPGGENQAMNHADPWLRTALGFIGIDEVTVVAAEGEESGGRSFEDSCAEAEQRLLALAQSA*
AnnotationID:3760GeneID:3753
AnnotatorUID: danlee
Modification Date/Time: 2004-04-15 18:06:49
Gene Name:
Confidence Code:3
GeneProduct:probable acyl carrier protein phosphodiesterase
Cell Localization:()
Synonyms:PA0785
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1182, pfam02525
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG1182, AcpD, Acyl carrier protein phosphodiesterase.  Score: 221, 8e-59
pfam02525, Flavodoxin_2, Flavodoxin-like fold. Score: 96.9, 3e-21






   
Genomic Context:






   
Comment:


















    ReferenceID:7509




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24651




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3753
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5967
                           PA0785_tr
                           translation of PA0785
                           212
                           99.05
                           99.52
                           0
                           1060.0
     

     
     
166612
                           gb|AAG04174.1|AE004513_6
                           (AE004513) probable acyl carrier protein phosphodiesterase [Pseudomonas aeruginosa PAO1]
                           212
                           99.05
                           99.52
                           0
                           1060.0
     

     
     
166613
                           dbj|BAB73804.1|
                           (AP003588) acyl carrier protein phosphodiesterase [Nostoc sp. PCC 7120]
                           216
                           40.74
                           60.18
                           13
                           377.0
     

     






      

          
GC ORFID: 46755How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0785Glimmer Score: 

          
Start: 153956Stop: 154594

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0785 translation of PA0785Homolog Bit Score 412.0

          
Other Homologs:  t_PA0785 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGTAGAATTCTTGCAGTGCATGCCAGTCCGCGAGGCGAGCGCTCGCAGTCCCGGCGTCTCGCCGAGGTT 
TTCCTGGCGGCCTATCGCGAAGCACATCCGCAGGCCCGCGTGGCTCGCCGCGAAGTCGGCCGGGTACCGCTT 
CCGGCGGTCACCGAGGCCTTCGTCGCCGCCGCCTTCCATCCCCAGCCGGAACAGCGTTCGCTGGCGATGCAG 
GCCGACCTGGCGCTGAGCGACCAACTGGTCGGCGAATTGTTCGACAGCGACCTGCTGGTGATCTCCACGCCG 
ATGTACAACTTCAGCGTGCCCAGCGGCCTGAAGGCCTGGATCGACCAGATCGTGCGCCTCGGGGTGACCTTC 
GATTTCGTCCTCGACAATGGCGTCGCCCAGTACCGGCCGCTGCTGCGCGGCAAGCGTGCGCTGATCGTCACC 
AGTCGCGGTGGCCATGGCTTCGGCCCGGGCGGCGAGAACCAGGCGATGAACCACGCCGATCCCTGGTTGCGC 
ACCGCGCTGGGTTTCATCGGCATCGACGAGGTCACGGTGGTCGCGGCGGAAGGCGAGGAATCCGGCGGCAGG 
TCCTTCGAGGACTCCTGCGCCGAGGCGGAACAGCGCCTGCTGGCGCTGGCGCAGTCGGCCTGA