ViewGene
Locus Name:
GeneID:
Location:

GeneID:3752
TrivialName: PA14_04860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04860
PAO1 Ortholog Locus:PA0370
Sequence Length:597
Protein Length:198
Start: 429277
Stop: 428681
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03759.1|AE004475_1 (AE004475) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 198/198 (100%), Positives = 198/198 (100%)
Sequence:
ATGAGCAAACCTACTGCGAAAGCCCCCGGCCGCCACGGCGGCCAGGGACAGCTGCGGATCATCGGTGGCGAA
TGGCGCAGCCGGCGTTTCGTCTTTCCCGACGGGCCCGGCCTGCGACCGACCCCGGACCGGGTCCGCGAGACC
CTGTTCAACTGGCTGGCACCCTATGTCGAAGGCGCACGGGTGCTCGATCCCTTCGCCGGCAGCGGCGCGCTG
TTCCTCGAGGCGTTGTCGCGCGGCGCCCGCGAAGGGCTGGCCCTGGATACCAACGGCGAAGCGGTGGCGGCC
CTGCGCAACCACCTCGACGCGCTCAAGTGCGGCACCGCCCAACTGGTCCTCGGCGATGCCGTGCGCTACCTG
GGAAACCAGGCTCCGAGCGCCTTCGACCTGGTGTTCCTCGACCCGCCGTTCCATCAGAACCTGCTGCAGGAC
GCCTGCCGCCTGCTCGAAACCCGCGGCTGGCTGAACCCCGACGCCTGGATCTATACCGAGAGCGAGAGCGTC
CCCTCGTCCCTCGGCCTGCCCGGAAACTGGCGGCTGCACCGGGAAAAGAAAGCCGGCAACGTACATTACGCG
CTCTGGCAGCGGGGAGCCTGA
Translation:
MSKPTAKAPGRHGGQGQLRIIGGEWRSRRFVFPDGPGLRPTPDRVRETLFNWLAPYVEGARVLDPFAGSGAL
FLEALSRGAREGLALDTNGEAVAALRNHLDALKCGTAQLVLGDAVRYLGNQAPSAFDLVFLDPPFHQNLLQD
ACRLLETRGWLNPDAWIYTESESVPSSLGLPGNWRLHREKKAGNVHYALWQRGA*
AnnotationID:3759GeneID:3752
AnnotatorUID: diggins
Modification Date/Time: 2005-03-25 05:05:09
Gene Name:
Confidence Code:3
GeneProduct:putative methyltransferase
Cell Localization:()
Synonyms:yhhF
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0742,pfam03602
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO53968.1| (AE016857) methyltransferase, putative [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 194

 Score =  282 bits (721), Expect = 9e-76
 Identities = 135/189 (71%), Positives = 150/189 (79%)

>emb|CAA58869.1| (X84051) hypothetical 21.7 kDa protein in ftsY 5' region
           [Pseudomonas aeruginosa]
          Length = 110

 Score =  222 bits (566), Expect = 9e-58
 Identities = 108/110 (98%), Positives = 109/110 (99%)








 
Structural Features:
COG0742,N6-adenine-specific methylase 
[DNA replication, recombination, and repair]
CD-Length = 187 residues, 100.0% aligned
Score =  213 bits (545), Expect = 8e-57
Identities = 93/187 (49%), Positives = 116/187 (62%), Gaps = 5/187 (2%)

pfam03602, Cons_hypoth95, Conserved hypothetical protein 95.
CD-Length = 182 residues, 100.0% aligned
Score =  213 bits (543), Expect = 2e-56
Identities = 89/182 (48%), Positives = 114/182 (62%), Gaps = 4/182 (2%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7507




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24649




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33685




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3752_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3752
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5966
                           PA0370_tr
                           translation of PA0370
                           198
                           99.99
                           99.99
                           0
                           1062.0
     

     
     
166568
                           gb|AAG03759.1|AE004475_1
                           (AE004475) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           198
                           99.99
                           99.99
                           0
                           1062.0
     

     
     
166569
                           gb|AAO53968.1|
                           (AE016857) methyltransferase, putative [Pseudomonas syringae pv. tomato str. DC3000]
                           198
                           69.19
                           77.27
                           4
                           723.0
     

     
     
166570
                           gb|AAN70679.1|AE016711_7
                           (AE016793) conserved hypothetical protein TIGR00095 [Pseudomonas putida KT2440]
                           201
                           62.68
                           74.12
                           4
                           691.0
     

     
     
166571
                           emb|CAA58869.1|
                           (X84051) hypothetical 21.7 kDa protein in ftsY 5' region [Pseudomonas aeruginosa]
                           198
                           54.54
                           55.05
                           88
                           566.0
     

     






      

          
GC ORFID: 46754How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0370Glimmer Score: 

          
Start: 6230619Stop: 6230023

          
Length: 597


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0370 translation of PA0370Homolog Bit Score 413.0

          
Other Homologs:  psyr_15may02_Scaffold6_revised_gene6822 (ORF: BLASTX 280.0), t_PA0370 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCAAACCTACTGCGAAAGCCCCCGGCCGCCACGGCGGCCAGGGACAGCTGCGGATCATCGGTGGCGAA 
TGGCGCAGCCGGCGTTTCGTCTTTCCCGACGGGCCCGGCCTGCGACCGACCCCGGACCGGGTCCGCGAGACC 
CTGTTCAACTGGCTGGCACCCTATGTCGAAGGCGCACGGGTGCTCGATCCCTTCGCCGGCAGCGGCGCGCTG 
TTCCTCGAGGCGTTGTCGCGCGGCGCCCGCGAAGGGCTGGCCCTGGATACCAACGGCGAAGCGGTGGCGGCC 
CTGCGCAACCACCTCGACGCGCTCAAGTGCGGCACCGCCCAACTGGTCCTCGGCGATGCCGTGCGCTACCTG 
GGAAACCAGGCTCCGAGCGCCTTCGACCTGGTGTTCCTCGACCCGCCGTTCCATCAGAACCTGCTGCAGGAC 
GCCTGCCGCCTGCTCGAAACCCGCGGCTGGCTGAACCCCGACGCCTGGATCTATACCGAGAGCGAGAGCGTC 
CCCTCGTCCCTCGGCCTGCCCGGAAACTGGCGGCTGCACCGGGAAAAGAAAGCCGGCAACGTACATTACGCG 
CTCTGGCAGCGGGGAGCCTGA