ViewGene
Locus Name:
GeneID:
Location:

GeneID:3750
TrivialName: PA14_73150
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_73150
PAO1 Ortholog Locus:PA5547
Sequence Length:624
Protein Length:207
Start: 6514115
Stop: 6514738
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08932.1|AE004967_3 (AE004967) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 206/207 (99%), Positives = 206/207 (99%)
Sequence:
ATGAACGAGACCGTGTCCCTCGAAACACGCGAAGTACGCTTTCTCTCCGTGTTCGACTTCGACGGTACGCTG
ACATACCGAGACAGCTTCGTGCCCTTCCTGCGCTTCGCCTTCGGCAACCGAGTGTTCGTCCGCCGCATGCTG
CGCATGGCAGGACCCAGCCTGGCCTATCTCTGCCGGCGTATCGGCCGCGACGACCTGAAGGCGCGCCTGATC
GCCACCTTCCTCACCGATGTGCCCGTACATGTGCTGGAAGAACGGGCGCTGGCCTACCAGAACCGCTTCTGG
GAAACACTGATGCGTCCCCACGCATTGACCGCGGTGGCCGACCAGGTCAGCAGCGGCAGCACCGTGACCATC
TGTTCCGCCTCCCCTTCGCTGCTACTCAGGCCGTTCGCCGAGAAGCTCGGCGTGCACCTGATCGCCACCGAG
CTGGAAGTGGTAGACGGCGTACTGACCGGCAGGATCGTCGGCCGCAACTGCCGGCGCGACGAGAAAGTCTGC
CGCCTGGAGCGGCACTACGGTCCGCTGACCCAATACTCCCTACGCGCCTGGGGCGACTCGCGCGGCGATACG
GAACTGCTGGCGGCGGCGCTGGAGCGCTTCTGGAAACCGTTCCGCTGA
Translation:
MNETVSLETREVRFLSVFDFDGTLTYRDSFVPFLRFAFGNRVFVRRMLRMAGPSLAYLCRRIGRDDLKARLI
ATFLTDVPVHVLEERALAYQNRFWETLMRPHALTAVADQVSSGSTVTICSASPSLLLRPFAEKLGVHLIATE
LEVVDGVLTGRIVGRNCRRDEKVCRLERHYGPLTQYSLRAWGDSRGDTELLAAALERFWKPFR*
AnnotationID:3757GeneID:3750
AnnotatorUID: diggins
Modification Date/Time: 2005-03-22 07:07:12
Gene Name:
Confidence Code:3
GeneProduct:putative phosphatase
Cell Localization:()
Synonyms:PA5547
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):am
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO54473.1| (AE016859) HAD-superfamily hydrolase [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 225

 Score =  231 bits (590), Expect = 2e-60
 Identities = 114/196 (58%), Positives = 146/196 (74%)






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7503




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24645




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:33334




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3750_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3750
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5964
                           PA5547_tr
                           translation of PA5547
                           207
                           99.51
                           99.51
                           0
                           1061.0
     

     
     
166530
                           gb|AAG08932.1|AE004967_3
                           (AE004967) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           207
                           99.51
                           99.51
                           0
                           1061.0
     

     
     
166532
                           gb|AAR07680.1|
                           (AY378100) hypothetical protein LV074 [Klebsiella pneumoniae]
                           221
                           51.58
                           65.61
                           20
                           588.0
     

     
     
166531
                           gb|AAO54473.1|
                           (AE016859) HAD-superfamily hydrolase [Pseudomonas syringae pv. tomato str. DC3000]
                           234
                           48.71
                           62.39
                           36
                           589.0
     

     
     
166533
                           gb|AAK23937.1|
                           (AE005869) cicA protein [Caulobacter crescentus CB15]
                           219
                           36.52
                           51.14
                           25
                           293.0
     

     






      

          
GC ORFID: 46752How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA5547Glimmer Score: 

          
Start: 5777804Stop: 5778427

          
Length: 624


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA5547 translation of PA5547Homolog Bit Score 413.0

          
Other Homologs:  t_PA5547 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGAGACCGTGTCCCTCGAAACACGCGAAGTACGCTTTCTCTCCGTGTTCGACTTCGACGGTACGCTG 
ACATACCGAGACAGCTTCGTGCCCTTCCTGCGCTTCGCCTTCGGCAACCGAGTGTTCGTCCGCCGCATGCTG 
CGCATGGCAGGACCCAGCCTGGCCTATCTCTGCCGGCGTATCGGCCGCGACGACCTGAAGGCGCGCCTGATC 
GCCACCTTCCTCACCGATGTGCCCGTACATGTGCTGGAAGAACGGGCGCTGGCCTACCAGAACCGCTTCTGG 
GAAACACTGATGCGTCCCCACGCATTGACCGCGGTGGCCGACCAGGTCAGCAGCGGCAGCACCGTGACCATC 
TGTTCCGCCTCCCCTTCGCTGCTACTCAGGCCGTTCGCCGAGAAGCTCGGCGTGCACCTGATCGCCACCGAG 
CTGGAAGTGGTAGACGGCGTACTGACCGGCAGGATCGTCGGCCGCAACTGCCGGCGCGACGAGAAAGTCTGC 
CGCCTGGAGCGGCACTACGGTCCGCTGACCCAATACTCCCTACGCGCCTGGGGCGACTCGCGCGGCGATACG 
GAACTGCTGGCGGCGGCGCTGGAGCGCTTCTGGAAACCGTTCCGCTGA