ViewGene

Locus Name:
GeneID:
Location:

GeneID:375
TrivialName: PA14_04290
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_04290
PAO1 Ortholog Locus:PA0328
Sequence Length:1944
Protein Length:647
Start: 384574
Stop: 382631
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG03717.1|AE004470_11 (AE004470) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 642/647 (99%), Positives = 645/647 (99%)
Sequence:
GTGTTCAAACCATTAGCTGTCGCTGTAGGCCTGGGATGTGCTGCGCTGTCGTTGGGTGCCAACGCCTATCAA
TACGGGGAATACGCCGGGGAGACCCTGGAGCGCCTGATCACCGACTACCCGGGCCGCTATCGCGGCACCGCC
AGCTTCGCCGGCGCCAGCGAACTGATGCAGTCGCGCCTGGGCTTCGGCTACCAGACCAGTCGCCAGGACTTC
ACCTGGGCCGGCAACCGCAGTTCGCAGAACGTCATCGCCTCGGCGCCCGGCAGCAGCGGGAAGTTCCTGGTA
CTCGGCGCGCACTACGACACCTACTACGGTCGCCCGACCCTGCAGGGCCTGGACGATAACGCCTCGGGCGCG
GCGGTGCTCACCGAGATCGCCCGCAACCTCGGCGGCATCGCCCTGGAGAACGGCCTCGAGGTGGTCGGTTTC
GGCGCCGAGGAGGAAGGCCTGCGCGGTTCGCGTGCCTACGTCGAGTCCCTCGACGCCAGCCAGCGCGCCAAC
CTGCTGGGAATGATCAACCTCGACAGCCTGGTCACCGGCGACAAGATGTACGCCCATGCCGGCTCCAACAGC
GTGTCCAACCCGGCCCTCGGCGCCTACCGCGAACAGATCCTGCGCATCGCCCGCGAGCTGGACATCCCGCTG
TTCACCAACCCCGGCCTGAACGCCGAATACCCGGCGGGTACCGGCTGCTGCAGCGACGGCGAAAGCTTCAAC
GGGATGGACATCCCGGTGTTGTTCATCGAGGCGACCAACTGGGAACTGGGCGACCTGGACGGCTACGAGCAG
ACCGACAACCCGGCGATTCCCGGCGGCTCAACCTGGCACGACCCGGCCGAGGACAACAAGGAAGTACTGACC
AACGCCCTCGGCCAAGAGCGCATCGAGCAACGCATGCGCGACTTTTCCCGCCTGCTGACGCGCCTGGTGCTG
GAGCTGACCAACGCCGACCTGCTGGCCTCCACCGCCTCCGGCGGCGCCCTGGCGCGGCAGATGGAAGACCAG
TTGCAGCGCCAGCACCAGGCACTGACCCGCCTGCACGACCGCCGCTGGCTGACCCTGCTCGGCAGCAACCGG
CCGGTAGGCAGCTTCGACGGCGAGGTGGGCGCGGAGGGCGAGGTCTCGCCGGACAGCGGTTTCGACATGCCT
GGCGATCCGGAGTCCAGGCGCGCCGGCGTGCATCTGCTCGGCGACTACCGCTACAGCGAGGCCCTGACCCTC
GGCGGCAGCCTGGCCTTCCAGCGCAGCCGCGACAAGCTGGACCATGGCGGGCGCATCGAGGGCGACACCTGG
CAGCTCGGCCTGTTCGGCCTGTACAACGACGGCGGTCCGGAATGGCTGGCCGGCGAGCTGAACCTCGGGCAT
ACCCGCTACGACAGCAAGCGTTCGGTCTACCTCCAGGCCGCCGGCGGGCCGGTGCTGCTCGACCAGCGTCTG
TCGGGCGACACCTCGGCCTGGTCCTGGGGCGCCCGGCTGGAAGGCGGCTATGACTTCAGCTTCGGCGAACTG
CGGAGCGGGCCGCTGGCCGGTCTCGACTACATGCGCTACCGCATCGACGACTTCCGCGAGGACGAGGCCCTG
CGTACCGCACTCGGCTACGAGAAGCAGGACTACGACTCGCTGGAGGCGAGCCTCGGCTGGCGCCTGCGCGGC
GAGCTGGCGCTGGGTGCGAGAATGCGCCTGCAACCCTACGCCAGCCTGCGCTGGGTCCGCGAGCTGGCGGAC
GGACGCCTGGAGGACATGGACCTGACCAGCCGCGGCGACGGGCGTGTCCGGGTCGCCGACATGGGCGGCGTG
GACAAGGATTTCGGCCGCGCCCAGCTTGGCGCGCAACTGGCGATCACCGAGCAGCTCGGGGTCTTCGCCGAA
GCCAACAGCCGCTTCGCCCACAGCGAAGGCAACCAGGCGGGCTATTCGCTCGGGGTGAACTGGCAGTTCTGA
Translation:
MFKPLAVAVGLGCAALSLGANAYQYGEYAGETLERLITDYPGRYRGTASFAGASELMQSRLGFGYQTSRQDF
TWAGNRSSQNVIASAPGSSGKFLVLGAHYDTYYGRPTLQGLDDNASGAAVLTEIARNLGGIALENGLEVVGF
GAEEEGLRGSRAYVESLDASQRANLLGMINLDSLVTGDKMYAHAGSNSVSNPALGAYREQILRIARELDIPL
FTNPGLNAEYPAGTGCCSDGESFNGMDIPVLFIEATNWELGDLDGYEQTDNPAIPGGSTWHDPAEDNKEVLT
NALGQERIEQRMRDFSRLLTRLVLELTNADLLASTASGGALARQMEDQLQRQHQALTRLHDRRWLTLLGSNR
PVGSFDGEVGAEGEVSPDSGFDMPGDPESRRAGVHLLGDYRYSEALTLGGSLAFQRSRDKLDHGGRIEGDTW
QLGLFGLYNDGGPEWLAGELNLGHTRYDSKRSVYLQAAGGPVLLDQRLSGDTSAWSWGARLEGGYDFSFGEL
RSGPLAGLDYMRYRIDDFREDEALRTALGYEKQDYDSLEASLGWRLRGELALGARMRLQPYASLRWVRELAD
GRLEDMDLTSRGDGRVRVADMGGVDKDFGRAQLGAQLAITEQLGVFAEANSRFAHSEGNQAGYSLGVNWQF*
AnnotationID:384GeneID:375
AnnotatorUID: diggins
Modification Date/Time: 2005-03-24 14:02:40
Gene Name:
Confidence Code:3
GeneProduct:putative integral membrane protein
Cell Localization:()
Synonyms:PA0328
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(15) Membrane proteins
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG5571
Secondary Functional Category(ies):cell motility and secretion
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
COG5571, Autotransporter protein or domain, integral membrane beta-barrel 
involved in protein secretion 
[Cell motility and secretion]
CD-Length = 239 residues, 100.0% aligned
Score =  256 bits (655), Expect = 5e-69
Identities = 99/254 (38%), Positives = 136/254 (53%), Gaps = 16/254 (6%)

Genomic Context:
Comment:
ReferenceID:14127
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:17895
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:33674
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:375_cdd.html
URL:
Homologs By Global Alignment
Gene ID:375

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
626 PA0328_tr translation of PA0328 647 99.22 99.69 0 3350.0
29340 gb|AAG03717.1|AE004470_11 (AE004470) hypothetical protein PA0328 [Pseudomonas aeruginosa PAO1] 647 99.07 99.69 0 3347.0
29339 emb|CAC14201.1| (AJ277639) PapB protein [Pseudomonas aeruginosa] 673 95.39 95.83 26 3350.0
GC ORFID: 43377How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA0328Glimmer Score:
Start: 6185916Stop: 6183973
Length: 1944
Start Codon: GTGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA0328 translation of PA0328Homolog Bit Score 1295.0
Other Homologs: t_PA0328 (ORF: GLIMMER)
GC ORF Sequence
GTGTTCAAACCATTAGCTGTCGCTGTAGGCCTGGGATGTGCTGCGCTGTCGTTGGGTGCCAACGCCTATCAA
TACGGGGAATACGCCGGGGAGACCCTGGAGCGCCTGATCACCGACTACCCGGGCCGCTATCGCGGCACCGCC
AGCTTCGCCGGCGCCAGCGAACTGATGCAGTCGCGCCTGGGCTTCGGCTACCAGACCAGTCGCCAGGACTTC
ACCTGGGCCGGCAACCGCAGTTCGCAGAACGTCATCGCCTCGGCGCCCGGCAGCAGCGGGAAGTTCCTGGTA
CTCGGCGCGCACTACGACACCTACTACGGTCGCCCGACCCTGCAGGGCCTGGACGATAACGCCTCGGGCGCG
GCGGTGCTCACCGAGATCGCCCGCAACCTCGGCGGCATCGCCCTGGAGAACGGCCTCGAGGTGGTCGGTTTC
GGCGCCGAGGAGGAAGGCCTGCGCGGTTCGCGTGCCTACGTCGAGTCCCTCGACGCCAGCCAGCGCGCCAAC
CTGCTGGGAATGATCAACCTCGACAGCCTGGTCACCGGCGACAAGATGTACGCCCATGCCGGCTCCAACAGC
GTGTCCAACCCGGCCCTCGGCGCCTACCGCGAACAGATCCTGCGCATCGCCCGCGAGCTGGACATCCCGCTG
TTCACCAACCCCGGCCTGAACGCCGAATACCCGGCGGGTACCGGCTGCTGCAGCGACGGCGAAAGCTTCAAC
GGGATGGACATCCCGGTGTTGTTCATCGAGGCGACCAACTGGGAACTGGGCGACCTGGACGGCTACGAGCAG
ACCGACAACCCGGCGATTCCCGGCGGCTCAACCTGGCACGACCCGGCCGAGGACAACAAGGAAGTACTGACC
AACGCCCTCGGCCAAGAGCGCATCGAGCAACGCATGCGCGACTTTTCCCGCCTGCTGACGCGCCTGGTGCTG
GAGCTGACCAACGCCGACCTGCTGGCCTCCACCGCCTCCGGCGGCGCCCTGGCGCGGCAGATGGAAGACCAG
TTGCAGCGCCAGCACCAGGCACTGACCCGCCTGCACGACCGCCGCTGGCTGACCCTGCTCGGCAGCAACCGG
CCGGTAGGCAGCTTCGACGGCGAGGTGGGCGCGGAGGGCGAGGTCTCGCCGGACAGCGGTTTCGACATGCCT
GGCGATCCGGAGTCCAGGCGCGCCGGCGTGCATCTGCTCGGCGACTACCGCTACAGCGAGGCCCTGACCCTC
GGCGGCAGCCTGGCCTTCCAGCGCAGCCGCGACAAGCTGGACCATGGCGGGCGCATCGAGGGCGACACCTGG
CAGCTCGGCCTGTTCGGCCTGTACAACGACGGCGGTCCGGAATGGCTGGCCGGCGAGCTGAACCTCGGGCAT
ACCCGCTACGACAGCAAGCGTTCGGTCTACCTCCAGGCCGCCGGCGGGCCGGTGCTGCTCGACCAGCGTCTG
TCGGGCGACACCTCGGCCTGGTCCTGGGGCGCCCGGCTGGAAGGCGGCTATGACTTCAGCTTCGGCGAACTG
CGGAGCGGGCCGCTGGCCGGTCTCGACTACATGCGCTACCGCATCGACGACTTCCGCGAGGACGAGGCCCTG
CGTACCGCACTCGGCTACGAGAAGCAGGACTACGACTCGCTGGAGGCGAGCCTCGGCTGGCGCCTGCGCGGC
GAGCTGGCGCTGGGTGCGAGAATGCGCCTGCAACCCTACGCCAGCCTGCGCTGGGTCCGCGAGCTGGCGGAC
GGACGCCTGGAGGACATGGACCTGACCAGCCGCGGCGACGGGCGTGTCCGGGTCGCCGACATGGGCGGCGTG
GACAAGGATTTCGGCCGCGCCCAGCTTGGCGCGCAACTGGCGATCACCGAGCAGCTCGGGGTCTTCGCCGAA
GCCAACAGCCGCTTCGCCCACAGCGAAGGCAACCAGGCGGGCTATTCGCTCGGGGTGAACTGGCAGTTCTGA