ViewGene

Locus Name:
GeneID:
Location:

GeneID:3749
TrivialName: PA14_15860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_15860
PAO1 Ortholog Locus:PA3754
Sequence Length:612
Protein Length:203
Start: 1352097
Stop: 1352708
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07141.1|AE004794_6 (AE004794) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 203/203 (100%), Positives = 203/203 (100%)
Sequence:
ATGAACTGCACGCTCGACGAGCTGCGCCAACGCATCGAGGCGCACCGCCCCCGCCAACTGGATACCGACCAG
CGCTTCCCCCAAGCGGCCGTGCTGGTGCCCATCACCCGCAGCGACGATCCGGAGCTGGTGCTGACCCTGCGC
GCCGCCGGTTTGTCTACCCATGGCGGCGAGGTCGCCTTCCCCGGCGGGCGGCGCGACCCGGAAGACGCCGAC
CTGGTGCGCACCGCCCTGCGCGAGGCGGAGGAGGAGATCGCCTTGCCGCCGGGCCTGGTGGAAGTGGTCGGG
CCGCTGAGCACCCTGGTCTCGCGGCATGGTATCGAGGTCACTCCCTATGTCGCCTTCATTCCCGACTTCGTC
GAGTACCAGCCCAACGACGGCGAGATCGCCGCGGTGTTCAACGTGCCGCTGAGTTTCTTTCGCGACGACCCG
CGCGAGGTCACCCACCGTATCGACTACTTCGGCCGCAGCTGGTACGTGCCCAGCTATCGCTTCGGCGAGTTC
AAGATCTGGGGCCTGACGGCCATCATGGTGGTGGAGCTGGTCAACCTGCTGTACGACGACCCCATCGACCTG
CACACGCCGCCGGCTTCGTTCATCAAACTGAGTTGA
Translation:
MNCTLDELRQRIEAHRPRQLDTDQRFPQAAVLVPITRSDDPELVLTLRAAGLSTHGGEVAFPGGRRDPEDAD
LVRTALREAEEEIALPPGLVEVVGPLSTLVSRHGIEVTPYVAFIPDFVEYQPNDGEIAAVFNVPLSFFRDDP
REVTHRIDYFGRSWYVPSYRFGEFKIWGLTAIMVVELVNLLYDDPIDLHTPPASFIKLS*
AnnotationID:3756GeneID:3749
AnnotatorUID: diggins
Modification Date/Time: 2005-06-15 06:06:44
Gene Name:
Confidence Code:3
GeneProduct:putative NUDIX hydrolase
Cell Localization:()
Synonyms:PA3754
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:KOG3069
Secondary Functional Category(ies):nucleotide biosynthesis and metabolism
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAO54985.1| (AE016861) mutT/nudix family protein [Pseudomonas syringae pv.
           tomato str. DC3000]
          Length = 198

 Score =  313 bits (801), Expect = 5e-85
 Identities = 147/192 (76%), Positives = 170/192 (88%)

>gb|AAL20740.1| (AE008781) putative NTP pyrophosphohydrolase [Salmonella
           typhimurium LT2]
          Length = 192

 Score =  124 bits (310), Expect = 5e-28
 Identities = 74/182 (40%), Positives = 103/182 (56%), Gaps = 8/182 (4%)
Structural Features:
KOG3069, Peroxisomal NUDIX hydrolase 
[Replication, recombination and repair]
CD-Length = 246 residues,  72.0% aligned
Score =  121 bits (305), Expect = 1e-28
Identities = 66/177 (37%), Positives = 89/177 (50%), Gaps = 11/177 (6%)
Genomic Context:
Comment:
ReferenceID:7501
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24643
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:31804
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3749_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3749

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5963 PA3754_tr translation of PA3754 203 99.99 99.99 0 1062.0
166510 gb|AAG07141.1|AE004794_6 (AE004794) hypothetical protein PA3754 [Pseudomonas aeruginosa PAO1] 203 99.99 99.99 0 1062.0
166512 gb|AAN67075.1|AE016336_7 (AE016779) MutT/nudix family protein [Pseudomonas putida KT2440] 203 72.90 83.25 4 783.0
166511 gb|AAO54985.1| (AE016861) mutT/nudix family protein [Pseudomonas syringae pv. tomato str. DC3000] 203 72.41 83.74 5 795.0
166526 emb|CAD14639.1| (AL646061) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum] 223 35.87 49.32 41 284.0
GC ORFID: 46751How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3754Glimmer Score:
Start: 3601840Stop: 3601229
Length: 612
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3754 translation of PA3754Homolog Bit Score 413.0
Other Homologs: psyr_15may02_Scaffold3_revised_gene4551 (ORF: BLASTX 313.0), t_PA3754 (ORF: GLIMMER)
GC ORF Sequence
ATGAACTGCACGCTCGACGAGCTGCGCCAACGCATCGAGGCGCACCGCCCCCGCCAACTGGATACCGACCAG
CGCTTCCCCCAAGCGGCCGTGCTGGTGCCCATCACCCGCAGCGACGATCCGGAGCTGGTGCTGACCCTGCGC
GCCGCCGGTTTGTCTACCCATGGCGGCGAGGTCGCCTTCCCCGGCGGGCGGCGCGACCCGGAAGACGCCGAC
CTGGTGCGCACCGCCCTGCGCGAGGCGGAGGAGGAGATCGCCTTGCCGCCGGGCCTGGTGGAAGTGGTCGGG
CCGCTGAGCACCCTGGTCTCGCGGCATGGTATCGAGGTCACTCCCTATGTCGCCTTCATTCCCGACTTCGTC
GAGTACCAGCCCAACGACGGCGAGATCGCCGCGGTGTTCAACGTGCCGCTGAGTTTCTTTCGCGACGACCCG
CGCGAGGTCACCCACCGTATCGACTACTTCGGCCGCAGCTGGTACGTGCCCAGCTATCGCTTCGGCGAGTTC
AAGATCTGGGGCCTGACGGCCATCATGGTGGTGGAGCTGGTCAACCTGCTGTACGACGACCCCATCGACCTG
CACACGCCGCCGGCTTCGTTCATCAAACTGAGTTGA