ViewGene
Locus Name:
GeneID:
Location:

GeneID:3748
TrivialName: PA14_20370
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_20370
PAO1 Ortholog Locus:PA3379
Sequence Length:630
Protein Length:209
Start: 1752255
Stop: 1752884
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06767.1|AE004759_14 (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 208/209 (99%), Positives = 208/209 (99%)
Sequence:
ATGACCAGCGCTTCGCTTCCCAGCCCGGCGGATACCGCCGCGCTATTGCAACCGGCGTTCCAgGACCCGGTC
CTGGACGCCCAGCGGAGTTTCCGCGCGGCGCTCAAGGCCCTCGCCGAACCGGGGCTGGTACGCAACCTCGAC
CGCGCACCGGCGCTGGCCGCGTTGCAACCGGCCAGCTACGCACTGTGCCTGAGCTTCCTCGACTCTGACACC
CCGCTGTGGCTGGCGCCGGGTCTCGACAGCCCGACGTTGCGCGCCAACCTGGCCTTCCATTGCGGCTGCCCG
ATCGTCGCCGAGCGCGAGCAGGCGCTGTTCGCCTTGCTCGACGAAGGCGAGCTGGACGACCTGAGCGGCTTC
GACAGCGGCAGCGACCGTTATCCGGACCAGTCCTGCACCCTGCTGATCCAGCTCGCCGGCCTCGATGGTGGC
GACTCGCTGGAGTGGCGCGGACCGGGTATCGCCGAGGTGCGCCAGGTGGCGTTGCCGGTGAGCGCCGGGTTC
TGGGCGCAGCGCGCCGCACGCACCGAATTCCCCAGGGGCCTGGATGCCTTCTTCGCCGCCGGCGAGCGCATC
CTCGGCCTGCCACGCAGTACCCGGGTCAGCGAACCCGTCGAGGAGGTGGCCTGA
Translation:
MTSASLPSPADTAALLQPAFQDPVLDAQRSFRAALKALAEPGLVRNLDRAPALAALQPASYALCLSFLDSDT
PLWLAPGLDSPTLRANLAFHCGCPIVAEREQALFALLDEGELDDLSGFDSGSDRYPDQSCTLLIQLAGLDGG
DSLEWRGPGIAEVRQVALPVSAGFWAQRAARTEFPRGLDAFFAAGERILGLPRSTRVSEPVEEVA*
AnnotationID:3755GeneID:3748
AnnotatorUID: danlee
Modification Date/Time: 2005-07-29 14:02:47
Gene Name:phnH
Confidence Code:3
GeneProduct:putative phosphonate metabolism protein, PhnH
Cell Localization:()
Synonyms:PA3379
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:pfam05845,COG3625
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO56065.1| (AE016865) PhnH protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 198

 Score =  245 bits (625), Expect = 1e-64
 Identities = 120/195 (61%), Positives = 144/195 (73%), Gaps = 3/195 (1%)

>dbj|BAB54657.1| (AP003015) phosphonate metabolism protein; PhnH [Mesorhizobium
           loti]
          Length = 211

 Score =  123 bits (309), Expect = 6e-28
 Identities = 79/206 (38%), Positives = 114/206 (55%), Gaps = 8/206 (3%)

>gb|AAA96999.1| (U14003) phnH [Escherichia coli]
          Length = 194

 Score =  122 bits (306), Expect = 1e-27
 Identities = 71/189 (37%), Positives = 107/189 (56%), Gaps = 3/189 (1%)








 
Structural Features:
pfam05845, PhnH, Bacterial phosphonate metabolism protein (PhnH). 
CD-Length = 194 residues, 100.0% aligned
Score =  217 bits (553), Expect = 1e-57
Identities = 96/194 (49%), Positives = 121/194 (62%), Gaps = 4/194 (2%)

COG3625, PhnH, Uncharacterized enzyme of phosphonate metabolism 
[Inorganic ion transport and metabolism]
CD-Length = 196 residues,  99.0% aligned
Score =  223 bits (569), Expect = 1e-59
Identities = 101/194 (52%), Positives = 126/194 (64%), Gaps = 3/194 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7499




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24641




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32183




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3748_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3748
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5962
                           PA3379_tr
                           translation of PA3379
                           209
                           99.52
                           99.52
                           0
                           1061.0
     

     
     
166507
                           gb|AAG06767.1|AE004759_14
                           (AE004759) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           209
                           99.52
                           99.52
                           0
                           1061.0
     

     
     
166508
                           gb|AAO56065.1|
                           (AE016865) PhnH protein [Pseudomonas syringae pv. tomato str. DC3000]
                           212
                           56.60
                           67.92
                           17
                           622.0
     

     
     
166509
                           dbj|BAB54548.1|
                           (AP003015) phosphonate metabolism protein [Mesorhizobium loti]
                           219
                           37.89
                           49.31
                           37
                           346.0
     

     






      

          
GC ORFID: 46750How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3379Glimmer Score: 

          
Start: 3201677Stop: 3201048

          
Length: 630


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3379 translation of PA3379Homolog Bit Score 413.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene1221 (ORF: BLASTX 244.0), t_PA3379 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACCAGCGCTTCGCTTCCCAGCCCGGCGGATACCGCCGCGCTATTGCAACCGGCGTTCCAgGACCCGGTC 
CTGGACGCCCAGCGGAGTTTCCGCGCGGCGCTCAAGGCCCTCGCCGAACCGGGGCTGGTACGCAACCTCGAC 
CGCGCACCGGCGCTGGCCGCGTTGCAACCGGCCAGCTACGCACTGTGCCTGAGCTTCCTCGACTCTGACACC 
CCGCTGTGGCTGGCGCCGGGTCTCGACAGCCCGACGTTGCGCGCCAACCTGGCCTTCCATTGCGGCTGCCCG 
ATCGTCGCCGAGCGCGAGCAGGCGCTGTTCGCCTTGCTCGACGAAGGCGAGCTGGACGACCTGAGCGGCTTC 
GACAGCGGCAGCGACCGTTATCCGGACCAGTCCTGCACCCTGCTGATCCAGCTCGCCGGCCTCGATGGTGGC 
GACTCGCTGGAGTGGCGCGGACCGGGTATCGCCGAGGTGCGCCAGGTGGCGTTGCCGGTGAGCGCCGGGTTC 
TGGGCGCAGCGCGCCGCACGCACCGAATTCCCCAGGGGCCTGGATGCCTTCTTCGCCGCCGGCGAGCGCATC 
CTCGGCCTGCCACGCAGTACCCGGGTCAGCGAACCCGTCGAGGAGGTGGCCTGA