ViewGene

Locus Name:
GeneID:
Location:

GeneID:3747
TrivialName: PA14_22380
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_22380
PAO1 Ortholog Locus:PA3232
Sequence Length:627
Protein Length:208
Start: 1949475
Stop: 1950101
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06620.1|AE004746_4 (AE004746) probable nuclease [Pseudomonas aeruginosa PAO1]
Identities = 205/208 (98%), Positives = 207/208 (99%)
Sequence:
ATGAACACCATGGTCAAGTTGCCCGACAGCCGCTGGCCGGGCTGGCGCCGCCGGCTGTATTGGTGGATGCAC
GAGGCGGTCGAGGCGGAGGAAGTGATCTCCCTCGATCTCGAGACCACCAGCCTCGACCCGCGTCGTGCCGAC
GTCCTCAGCATCGGCGCGGTGCTGGTGCGGCGCGGCAAACTGGTCATGGGCGAGCGCCTGGAACTCTACGTC
GAGCCGCCGCCGAGCCTGGACGCGGAGTCGATCCGCATCCACAAGCTGCGCCGCGCCGACCTGGAGGGACAG
TTGCAGCTGGAGCAGGCCCTGCGCCAGTTGCTGGCGTTCATCGGCGACCGGCCGCTGCTCGGCTACTACCTG
TCGTTCGATGTCGCCGTGCTGAACCGGCACCTGCGCCAGCTCTTCGACCGACAGTTGCACAACCCTTCCATC
GAGATTTCGTCGCTGTACCACCGGAAGGTCAGCCGGCATTTTCCCGACGCACACATCGACCTGCGCTTCGAC
ACCCTGGCGCGGGCCCTGGATGTGCCGGTCAGCGGTCGCCATACCGCCCTCGGCGACGCCCAGGCGGTGGCG
CTGATGTTCATGCGCCTGCTCAAGGGGCCGGCGCCCAAGGTCATCCACTGA
Translation:
MNTMVKLPDSRWPGWRRRLYWWMHEAVEAEEVISLDLETTSLDPRRADVLSIGAVLVRRGKLVMGERLELYV
EPPPSLDAESIRIHKLRRADLEGQLQLEQALRQLLAFIGDRPLLGYYLSFDVAVLNRHLRQLFDRQLHNPSI
EISSLYHRKVSRHFPDAHIDLRFDTLARALDVPVSGRHTALGDAQAVALMFMRLLKGPAPKVIH*
AnnotationID:3754GeneID:3747
AnnotatorUID: diggins
Modification Date/Time: 2005-04-14 13:01:21
Gene Name:
Confidence Code:3
GeneProduct:putative nuclease
Cell Localization:()
Synonyms:PA3232
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(11) DNA replication, recombination, modification and repair
Alternate Gene Product Name:putative DNA polymerase III, epsilon subunit
Functional Category Confidence Code:5
COGs:smart00479,pfam00929
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
>gb|AAF93473.1| (AE004118) DNA polymerase III, epsilon subunit, putative [Vibrio
           cholerae]
          Length = 223

 Score =  157 bits (397), Expect = 4e-38
 Identities = 82/208 (39%), Positives = 125/208 (60%), Gaps = 11/208 (5%)

>gb|AAO09695.1|AE016801_14 (AE016801) DNA polymerase III, epsilon subunit [Vibrio vulnificus
           CMCP6]
          Length = 211

 Score =  155 bits (393), Expect = 1e-37
 Identities = 78/202 (38%), Positives = 124/202 (61%), Gaps = 10/202 (4%)
Structural Features:
smart00479, EXOIII, exonuclease domain in DNA-polymerase alpha 
and epsilon chain, ribonuclease T and other exonucleases
CD-Length = 171 residues,  97.7% aligned
Score = 87.7 bits (217), Expect = 9e-19
Identities = 49/174 (28%), Positives = 80/174 (45%), Gaps = 11/174 (6%)

pfam00929, Exonuc_X-T, Exonuclease
CD-Length = 162 residues, 100.0% aligned
Score = 70.8 bits (173), Expect = 1e-13
Genomic Context:
Comment:
ReferenceID:7497
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24639
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
ReferenceID:32311
Author/Investigator(s):
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:Misc (text/plain)
Data:3747_cdd.html
URL:
Homologs By Global Alignment
Gene ID:3747

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5961 PA3232_tr translation of PA3232 208 98.55 99.51 0 1062.0
166505 gb|AAG06620.1|AE004746_4 (AE004746) probable nuclease [Pseudomonas aeruginosa PAO1] 208 98.55 99.51 0 1062.0
166506 gb|AAQ60614.1| (AE016920) probable DNA polymerase III [Chromobacterium violaceum ATCC 12472] 218 38.99 52.75 26 346.0
GC ORFID: 46749How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3232Glimmer Score:
Start: 3004456Stop: 3003830
Length: 627
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3232 translation of PA3232Homolog Bit Score 413.0
Other Homologs: t_PA3232 (ORF: GLIMMER)
GC ORF Sequence
ATGAACACCATGGTCAAGTTGCCCGACAGCCGCTGGCCGGGCTGGCGCCGCCGGCTGTATTGGTGGATGCAC
GAGGCGGTCGAGGCGGAGGAAGTGATCTCCCTCGATCTCGAGACCACCAGCCTCGACCCGCGTCGTGCCGAC
GTCCTCAGCATCGGCGCGGTGCTGGTGCGGCGCGGCAAACTGGTCATGGGCGAGCGCCTGGAACTCTACGTC
GAGCCGCCGCCGAGCCTGGACGCGGAGTCGATCCGCATCCACAAGCTGCGCCGCGCCGACCTGGAGGGACAG
TTGCAGCTGGAGCAGGCCCTGCGCCAGTTGCTGGCGTTCATCGGCGACCGGCCGCTGCTCGGCTACTACCTG
TCGTTCGATGTCGCCGTGCTGAACCGGCACCTGCGCCAGCTCTTCGACCGACAGTTGCACAACCCTTCCATC
GAGATTTCGTCGCTGTACCACCGGAAGGTCAGCCGGCATTTTCCCGACGCACACATCGACCTGCGCTTCGAC
ACCCTGGCGCGGGCCCTGGATGTGCCGGTCAGCGGTCGCCATACCGCCCTCGGCGACGCCCAGGCGGTGGCG
CTGATGTTCATGCGCCTGCTCAAGGGGCCGGCGCCCAAGGTCATCCACTGA