ViewGene
Locus Name:
GeneID:
Location:

GeneID:3746
TrivialName: PA14_52820
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_52820
PAO1 Ortholog Locus:PA0885
Sequence Length:639
Protein Length:212
Start: 4684021
Stop: 4683383
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04274.1|AE004523_2 (AE004523) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
Identities = 208/212 (98%), Positives = 209/212 (98%)
Sequence:
ATGAATCGACTCGTGCGCGTCTGGAACCGCTTCGAGGAGGGCGCTATCGTCTTCCTGCTGGCGGCGATGACG
CTGGTGACCTTCCTCTATGTGGTGATGACCAACGTCTTCACCCTGTTCTACGACCTCGGCGACCGCCTGCCG
GCACTGCGGGCTCCGCTGTACTCGGTGGGCGACGCGATCCTCGGGGTAGCCCAGGACATGTCCTGGAGCAAC
GCGCTGACCAAGGCGCTGTTCGGCTGGCTGATCTTCCTCGGCATCGCCTACGGCGTACGCACCGCCGGCCAC
CTCGGGGTGGACGCCCTGGTGCGCCTGGCGCCGCGTCCCTTGCAGCGCCTGATCGGGATACTCGCCTGCCTC
TGCTGCCTGGGCTATGCCGGGCTGTTCATGGTCGCCAGCTACGACTGGGTGAAGACCCTGTTGGTCGCCGGC
ATCGGCGCCGAGGACCTCGACCACTTCGGCATCCTCCAGGCCTACATCGCGGTGGTGGTGCCGGTCGGCTTC
GGCCTGGTGCTGCTGCGCTACCTGGAAATCCTCGTCAACCTGTTGCGCGGTCGCCAGCTCGGGCTGGGCCTC
GCCGACGAGGCCGCCGAGGCCTCCAAACTGGCCGGCGAAGAGGCCGGGGAGAACCGTCCATGA
Translation:
MNRLVRVWNRFEEGAIVFLLAAMTLVTFLYVVMTNVFTLFYDLGDRLPALRAPLYSVGDAILGVAQDMSWSN
ALTKALFGWLIFLGIAYGVRTAGHLGVDALVRLAPRPLQRLIGILACLCCLGYAGLFMVASYDWVKTLLVAG
IGAEDLDHFGILQAYIAVVVPVGFGLVLLRYLEILVNLLRGRQLGLGLADEAAEASKLAGEEAGENRP*
AnnotationID:3753GeneID:3746
AnnotatorUID: danlee
Modification Date/Time: 2004-05-03 15:03:23
Gene Name:
Confidence Code:3
GeneProduct:probable C4-dicarboxylate transporter
Cell Localization:()
Synonyms:PA0885, dctQ
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(27) Transport of small molecules
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG309
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component. Score: 109, 5e-25
pfam04290, DctQ, Tripartite ATP-independent periplasmic transporters, DctQ component. Score: 100, 3e-22






   
Genomic Context:






   
Comment:


















    ReferenceID:7495




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24637




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3746
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5959
                           PA0885_tr
                           translation of PA0885
                           212
                           98.11
                           98.58
                           0
                           1061.0
     

     
     
166501
                           gb|AAG04274.1|AE004523_2
                           (AE004523) probable C4-dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
                           212
                           98.11
                           98.58
                           0
                           1061.0
     

     
     
5960
                           PA5168_tr
                           translation of PA5168
                           212
                           66.50
                           78.77
                           2
                           736.0
     

     
     
166502
                           gb|AAG08553.1|AE004929_8
                           (AE004929) probable dicarboxylate transporter [Pseudomonas aeruginosa PAO1]
                           212
                           66.50
                           78.77
                           2
                           736.0
     

     
     
166503
                           emb|CAC44172.1|
                           (AJ313422) probable dicarboxylate transporter [Pseudomonas stutzeri]
                           217
                           60.82
                           75.57
                           10
                           701.0
     

     






      

          
GC ORFID: 46748How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA0885Glimmer Score: 

          
Start: 269886Stop: 270524

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA0885 translation of PA0885Homolog Bit Score 413.0

          
Other Homologs:  t_PA5168 (ORF: BLASTX 289.0), t_PA0885 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAATCGACTCGTGCGCGTCTGGAACCGCTTCGAGGAGGGCGCTATCGTCTTCCTGCTGGCGGCGATGACG 
CTGGTGACCTTCCTCTATGTGGTGATGACCAACGTCTTCACCCTGTTCTACGACCTCGGCGACCGCCTGCCG 
GCACTGCGGGCTCCGCTGTACTCGGTGGGCGACGCGATCCTCGGGGTAGCCCAGGACATGTCCTGGAGCAAC 
GCGCTGACCAAGGCGCTGTTCGGCTGGCTGATCTTCCTCGGCATCGCCTACGGCGTACGCACCGCCGGCCAC 
CTCGGGGTGGACGCCCTGGTGCGCCTGGCGCCGCGTCCCTTGCAGCGCCTGATCGGGATACTCGCCTGCCTC 
TGCTGCCTGGGCTATGCCGGGCTGTTCATGGTCGCCAGCTACGACTGGGTGAAGACCCTGTTGGTCGCCGGC 
ATCGGCGCCGAGGACCTCGACCACTTCGGCATCCTCCAGGCCTACATCGCGGTGGTGGTGCCGGTCGGCTTC 
GGCCTGGTGCTGCTGCGCTACCTGGAAATCCTCGTCAACCTGTTGCGCGGTCGCCAGCTCGGGCTGGGCCTC 
GCCGACGAGGCCGCCGAGGCCTCCAAACTGGCCGGCGAAGAGGCCGGGGAGAACCGTCCATGA