ViewGene

Locus Name:
GeneID:
Location:

GeneID:3744
TrivialName: PA14_12440
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_12440
PAO1 Ortholog Locus:PA3973
Sequence Length:648
Protein Length:215
Start: 1071822
Stop: 1072469
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07360.1|AE004815_4 (AE004815) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 214/215 (99%), Positives = 214/215 (99%)
Sequence:
ATGGTCTATCGTGTCACCGAACGCCGCCTGCAACGCGATTCCGCGCTGCGCGAGCGCATCCTCCAGCTAGGC
CTGCGGCGTGTCGCGGAGGGCGGTTTCGCCGCGCTGACCATGCAGGCCCTGGCCGACGACGCGGGGATCGCC
ACCGGCAGCCTGTACCGCCACTTCCGGGGCAAGGGCGAGCTGGCGGCGGAAATCTTCCGCCGCGCCAGCCAG
CGTGAGGTCGATGCCCTGGCCGTGGTCCTGCGCGGTCCCGGCGCGCCCGCCTGGCGCCTGGCCGAGGGCTTG
CGGCGCTTTGCCGCGCGCGCCTGGAGCAGCCAGCGGCTGGCCTTCGCCCTGATCGCCGAGCCGGTGGATCCT
GAAGTCGACGAGCAGCGCCTGCGCTATCGCGAGGCCTACGCCGCACTGTTCGTCGAACTGCTCGAGGAGGGC
CGGCGCAGTGGCGCATTCCAGCTTTCCCTGGTGCCGCTTGCCGCGGCCTGCCTGGTCGGGGCCATCGCCGAG
GCGCTGGTCGGCCCCTTGTCTCCCCCGGCGCGCGCCGCTCGCGACAGCGGCCAGCCGGAACCGAGTCTGGAG
CCGGTGAGTACGGCTCTGGTGAACTTCTGCCTGCGCGCGGTGGGCGCGCCTGTCTGCGAGGAACCCTCATGA
Translation:
MVYRVTERRLQRDSALRERILQLGLRRVAEGGFAALTMQALADDAGIATGSLYRHFRGKGELAAEIFRRASQ
REVDALAVVLRGPGAPAWRLAEGLRRFAARAWSSQRLAFALIAEPVDPEVDEQRLRYREAYAALFVELLEEG
RRSGAFQLSLVPLAAACLVGAIAEALVGPLSPPARAARDSGQPEPSLEPVSTALVNFCLRAVGAPVCEEPS*
AnnotationID:3751GeneID:3744
AnnotatorUID: urbach
Modification Date/Time: 2004-05-30 14:02:23
Gene Name:
Confidence Code:3
GeneProduct:possible transcriptional regulator acrR family
Cell Localization:()
Synonyms:PA3973
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309, pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
Structural Features:
gnl|CDD|11025 COG1309, AcrR, Transcriptional regulator [Transcription]
          Length = 201

 Score = 51.6 bits (121), Expect = 2e-07
 Identities = 54/177 (30%), Positives = 74/177 (41%), Gaps = 1/177 (0%)
Genomic Context:
Comment:
ReferenceID:7491
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24633
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3744

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5957 PA3973_tr translation of PA3973 215 99.53 99.53 0 1065.0
166441 gb|AAG07360.1|AE004815_4 (AE004815) probable transcriptional regulator [Pseudomonas aeruginosa PAO1] 215 99.53 99.53 0 1065.0
166442 gb|AAM35158.1| (AE011651) transcriptional regulator acrR family [Xanthomonas axonopodis pv. citri str. 306] 215 39.53 53.95 9 366.0
166443 gb|AAM39566.1| (AE012121) transcriptional regulator acrR family [Xanthomonas campestris pv. campestris str. ATCC 33913] 215 39.53 54.88 10 356.0
GC ORFID: 46746How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA3973Glimmer Score:
Start: 3882116Stop: 3881469
Length: 648
Start Codon: ATGTruncated Start:
Stop Codon: TGATruncated Stop:
Homolog: t_PA3973 translation of PA3973Homolog Bit Score 414.0
Other Homologs: t_PA3973 (ORF: GLIMMER)
GC ORF Sequence
ATGGTCTATCGTGTCACCGAACGCCGCCTGCAACGCGATTCCGCGCTGCGCGAGCGCATCCTCCAGCTAGGC
CTGCGGCGTGTCGCGGAGGGCGGTTTCGCCGCGCTGACCATGCAGGCCCTGGCCGACGACGCGGGGATCGCC
ACCGGCAGCCTGTACCGCCACTTCCGGGGCAAGGGCGAGCTGGCGGCGGAAATCTTCCGCCGCGCCAGCCAG
CGTGAGGTCGATGCCCTGGCCGTGGTCCTGCGCGGTCCCGGCGCGCCCGCCTGGCGCCTGGCCGAGGGCTTG
CGGCGCTTTGCCGCGCGCGCCTGGAGCAGCCAGCGGCTGGCCTTCGCCCTGATCGCCGAGCCGGTGGATCCT
GAAGTCGACGAGCAGCGCCTGCGCTATCGCGAGGCCTACGCCGCACTGTTCGTCGAACTGCTCGAGGAGGGC
CGGCGCAGTGGCGCATTCCAGCTTTCCCTGGTGCCGCTTGCCGCGGCCTGCCTGGTCGGGGCCATCGCCGAG
GCGCTGGTCGGCCCCTTGTCTCCCCCGGCGCGCGCCGCTCGCGACAGCGGCCAGCCGGAACCGAGTCTGGAG
CCGGTGAGTACGGCTCTGGTGAACTTCTGCCTGCGCGCGGTGGGCGCGCCTGTCTGCGAGGAACCCTCATGA