ViewGene
Locus Name:
GeneID:
Location:

GeneID:3742
TrivialName: PA14_16790
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_16790
PAO1 Ortholog Locus:PA3678
Sequence Length:639
Protein Length:212
Start: 1437549
Stop: 1436911
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07066.1|AE004787_6 (AE004787) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
Identities = 211/212 (99%), Positives = 211/212 (99%)
Sequence:
ATGTCAGAACCCACCTCCTCCGTCGGTCCCGGCCGGCCCAAGGACCCGGCCAAACGGGAAGCCATTCTCGAG
GCGGCCAAGCGCCTGTTCCTCTGCAACGGCTACGACGGCAGCAGCATGGAAGCCATCGCCTCGGAAGCCGGC
GTTTCCAAGCTCACCGTCTACAGCCACTTCACCGACAAGGAAACCCTGTTCAGCGAAGCGGTGAAGGCCAAG
TGCGCCGAGCAGCTTCCCGCCCTGTACTTCCAGCTGGCCGAAGGCGCGCCGCTGGAAAAGGTCCTGCTGAAT
ATCGCCCGCGGCTTCCACCGGCTGATCAACAGCCACGAGGCGATCGCCCTGACCCGCCTGATGGCCGCGCAG
GCCGGGCAGAACCCCAAGCTTTCCGAGCTGTTCTTCGAGGCCGGGCCGAAGCAGGTGATCGACGAGATGGAA
CGCCTCCTCGAGCAGGCCCGCCGCAGCGGCAAGCTGGCGTTCCCGGACGCGCGACACGCCGCCGAACACTTC
TTCATGCTGGTCAAGGGCTGCGCCAATTACCGTCTGTTGATCGGCTGCGCCGAACCGCTGGACGAGGCCGAA
GGCGAGCGGCACGTGGAAGAAGTGGTGGCGCTGTTCCTGCGCGCCTTCGCCGCGGGCGGCTGA
Translation:
MSEPTSSVGPGRPKDPAKREAILEAAKRLFLCNGYDGSSMEAIASEAGVSKLTVYSHFTDKETLFSEAVKAK
CAEQLPALYFQLAEGAPLEKVLLNIARGFHRLINSHEAIALTRLMAAQAGQNPKLSELFFEAGPKQVIDEME
RLLEQARRSGKLAFPDARHAAEHFFMLVKGCANYRLLIGCAEPLDEAEGERHVEEVVALFLRAFAAGG*
AnnotationID:3749GeneID:3742
AnnotatorUID: diggins
Modification Date/Time: 2005-04-21 10:10:01
Gene Name:
Confidence Code:3
GeneProduct:putative transcriptional regulator, tetR family
Cell Localization:()
Synonyms:PA3678
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(25) Transcriptional regulators
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG1309,pfam00440
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67136.1|AE016342_8 (AE016779) transcriptional regulator, tetR family [Pseudomonas
           putida KT2440]
          Length = 213

 Score =  234 bits (596), Expect = 3e-61
 Identities = 122/201 (60%), Positives = 144/201 (71%)

>gb|AAM42604.1| (AE012451) transcriptional regulator [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
          Length = 217

 Score =  154 bits (388), Expect = 4e-37
 Identities = 86/208 (41%), Positives = 118/208 (56%)






 
Structural Features:
COG1309, AcrR, Transcriptional regulator [Transcription]
CD-Length = 201 residues,  98.0% aligned
Score = 62.7 bits (150), Expect = 6e-11
Identities = 57/201 (28%), Positives = 83/201 (41%), Gaps = 5/201 (2%)

pfam00440, TetR_N, Bacterial regulatory proteins, tetR family.
CD-Length = 47 residues, 100.0% aligned
Score = 58.4 bits (142), Expect = 1e-09
Identities = 23/47 (48%), Positives = 28/47 (59%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7487




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24629




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:31867




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3742_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3742
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5955
                           PA3678_tr
                           translation of PA3678
                           212
                           99.52
                           99.52
                           0
                           1066.0
     

     
     
166375
                           gb|AAG07066.1|AE004787_6
                           (AE004787) probable transcriptional regulator [Pseudomonas aeruginosa PAO1]
                           212
                           99.52
                           99.52
                           0
                           1066.0
     

     
     
166376
                           gb|AAN67136.1|AE016342_8
                           (AE016779) transcriptional regulator, tetR family [Pseudomonas putida KT2440]
                           217
                           56.22
                           68.20
                           9
                           587.0
     

     
     
166377
                           gb|AAM38304.1|
                           (AE011993) transcriptional regulator [Xanthomonas axonopodis pv. citri str. 306]
                           218
                           39.44
                           55.04
                           7
                           391.0
     

     
     
166378
                           gb|AAM42604.1|
                           (AE012451) transcriptional regulator [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           218
                           39.44
                           54.12
                           7
                           385.0
     

     






      

          
GC ORFID: 46744How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3678Glimmer Score: 

          
Start: 3516388Stop: 3517026

          
Length: 639


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3678 translation of PA3678Homolog Bit Score 415.0

          
Other Homologs:  t_PA3678 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGTCAGAACCCACCTCCTCCGTCGGTCCCGGCCGGCCCAAGGACCCGGCCAAACGGGAAGCCATTCTCGAG 
GCGGCCAAGCGCCTGTTCCTCTGCAACGGCTACGACGGCAGCAGCATGGAAGCCATCGCCTCGGAAGCCGGC 
GTTTCCAAGCTCACCGTCTACAGCCACTTCACCGACAAGGAAACCCTGTTCAGCGAAGCGGTGAAGGCCAAG 
TGCGCCGAGCAGCTTCCCGCCCTGTACTTCCAGCTGGCCGAAGGCGCGCCGCTGGAAAAGGTCCTGCTGAAT 
ATCGCCCGCGGCTTCCACCGGCTGATCAACAGCCACGAGGCGATCGCCCTGACCCGCCTGATGGCCGCGCAG 
GCCGGGCAGAACCCCAAGCTTTCCGAGCTGTTCTTCGAGGCCGGGCCGAAGCAGGTGATCGACGAGATGGAA 
CGCCTCCTCGAGCAGGCCCGCCGCAGCGGCAAGCTGGCGTTCCCGGACGCGCGACACGCCGCCGAACACTTC 
TTCATGCTGGTCAAGGGCTGCGCCAATTACCGTCTGTTGATCGGCTGCGCCGAACCGCTGGACGAGGCCGAA 
GGCGAGCGGCACGTGGAAGAAGTGGTGGCGCTGTTCCTGCGCGCCTTCGCCGCGGGCGGCTGA