ViewGene
Locus Name:
GeneID:
Location:

GeneID:3741
TrivialName: PA14_42740
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_42740
PAO1 Ortholog Locus:PA1683
Sequence Length:618
Protein Length:205
Start: 3801652
Stop: 3801035
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG05072.1|AE004595_11 (AE004595) probable sugar aldolase [Pseudomonas aeruginosa PAO1]
Identities = 204/205 (99%), Positives = 205/205 (100%)
Sequence:
ATGAACGACAACCGTGAACAGCTGACCCAGCAGATCATCGACGCCGGCCGGTTCCTCTACGGCCGCGGCTGG
TCGCCGGCGACCAGCAGCAACTACTCCGCGCGCCTGGACGAACAGCGCGCGCTGCTCACCGTCTCGGGCAAG
CACAAGGGCCAGTTGGGCTTCGACGACGTGCTGGCCACCGACCTGGCCGGCAACAGCCTGGAACCGGGCAAG
AAACCCTCGGCGGAGACCCTCCTGCACACCCAGCTGTATGCCTGGAACCCGGCGATCGGCGCAGTGCTGCAT
ACCCACTCGGTGAATGCCACCGTGCTTTCCCGCCTGGTTCGCGGCGACCGCCTGGTGCTGCAGGACTACGAA
CTGCAGAAAGCCTTCGCCGGGGTCACCACCCACGAAGGCCAGGTCGAGGTGCCGATCTTCGACAACGACCAG
GACATCGCTCGCCTGGCCAGCCGTGTGCAGCCCTGGCTGGAGGCGCATCCGTACTGCCCGGGGTATTTGATC
CGCGGCCACGGGCTGTACACTTGGGGTGCGCGCATGAGCGATGCCCTGCGTCAGGTGGAAGCTTTCGAGTTT
CTGTTCGAGTGTGAACTGAAAGTACTGAGTCTGAGCCGATGA
Translation:
MNDNREQLTQQIIDAGRFLYGRGWSPATSSNYSARLDEQRALLTVSGKHKGQLGFDDVLATDLAGNSLEPGK
KPSAETLLHTQLYAWNPAIGAVLHTHSVNATVLSRLVRGDRLVLQDYELQKAFAGVTTHEGQVEVPIFDNDQ
DIARLASRVQPWLEAHPYCPGYLIRGHGLYTWGARMSDALRQVEAFEFLFECELKVLSLSR*
AnnotationID:3748GeneID:3741
AnnotatorUID: diggins
Modification Date/Time: 2005-02-27 19:07:29
Gene Name:
Confidence Code:3
GeneProduct:putative sugar aldolase
Cell Localization:()
Synonyms:PA1683
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(5) Carbon compound catabolism
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0235,pfam00596,cd00398
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAO55563.1| (AE016863) class II aldolase/adducin domain protein [Pseudomonas
           syringae pv. tomato str. DC3000]
          Length = 204

 Score =  338 bits (867), Expect = 1e-92
 Identities = 165/197 (83%), Positives = 175/197 (88%)

>gb|AAC07751.1| (AE000766) fuculose-1-phosphate aldolase [Aquifex aeolicus VF5]
          Length = 208

 Score =  201 bits (511), Expect = 2e-51
 Identities = 101/193 (52%), Positives = 135/193 (69%), Gaps = 1/193 (0%)

>gb|AAM41109.1| (AE012284) sugar aldolase [Xanthomonas campestris pv. campestris
           str. ATCC 33913]
          Length = 217

 Score =  192 bits (488), Expect = 1e-48
 Identities = 104/198 (52%), Positives = 132/198 (66%), Gaps = 2/198 (1%)






 
Structural Features:
COG0235, AraD, Ribulose-5-phosphate 4-epimerase and related epimerases and aldolases 
[Carbohydrate transport and metabolism]
CD-Length = 219 residues,  89.5% aligned
Score =  162 bits (412), Expect = 2e-41
Identities = 75/209 (35%), Positives = 103/209 (49%), Gaps = 17/209 (8%)

pfam00596, Aldolase_II, Class II Aldolase and Adducin N-terminal domain.
CD-Length = 198 residues,  94.4% aligned
Score =  155 bits (393), Expect = 3e-39
Identities = 64/195 (32%), Positives = 86/195 (44%), Gaps = 9/195 (4%)

cd00398, Aldolase_II, Class II Aldolase and Adducin head (N-terminal) domain.
CD-Length = 209 residues,  90.4% aligned
Score = 96.1 bits (239), Expect = 3e-21
Identities = 60/199 (30%), Positives = 87/199 (43%), Gaps = 11/199 (5%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7485




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24627




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37193




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3741_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3741
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5954
                           PA1683_tr
                           translation of PA1683
                           205
                           99.51
                           99.99
                           0
                           1067.0
     

     
     
166368
                           gb|AAG05072.1|AE004595_11
                           (AE004595) probable sugar aldolase [Pseudomonas aeruginosa PAO1]
                           205
                           99.51
                           99.99
                           0
                           1067.0
     

     
     
166369
                           gb|AAO55563.1|
                           (AE016863) class II aldolase/adducin domain protein [Pseudomonas syringae pv. tomato str. DC3000]
                           206
                           80.09
                           85.92
                           3
                           863.0
     

     
     
166370
                           gb|AAC07751.1|
                           (AE000766) fuculose-1-phosphate aldolase [Aquifex aeolicus VF5]
                           209
                           49.28
                           66.02
                           5
                           506.0
     

     
     
166371
                           gb|AAM41109.1|
                           (AE012284) sugar aldolase [Xanthomonas campestris pv. campestris str. ATCC 33913]
                           218
                           48.62
                           61.46
                           14
                           483.0
     

     






      

          
GC ORFID: 46743How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1683Glimmer Score: 

          
Start: 1152257Stop: 1152874

          
Length: 618


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA1683 translation of PA1683Homolog Bit Score 415.0

          
Other Homologs:  psyr_15may02_Scaffold1_revised_gene857 (ORF: BLASTX 337.0), t_PA1683 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAACGACAACCGTGAACAGCTGACCCAGCAGATCATCGACGCCGGCCGGTTCCTCTACGGCCGCGGCTGG 
TCGCCGGCGACCAGCAGCAACTACTCCGCGCGCCTGGACGAACAGCGCGCGCTGCTCACCGTCTCGGGCAAG 
CACAAGGGCCAGTTGGGCTTCGACGACGTGCTGGCCACCGACCTGGCCGGCAACAGCCTGGAACCGGGCAAG 
AAACCCTCGGCGGAGACCCTCCTGCACACCCAGCTGTATGCCTGGAACCCGGCGATCGGCGCAGTGCTGCAT 
ACCCACTCGGTGAATGCCACCGTGCTTTCCCGCCTGGTTCGCGGCGACCGCCTGGTGCTGCAGGACTACGAA 
CTGCAGAAAGCCTTCGCCGGGGTCACCACCCACGAAGGCCAGGTCGAGGTGCCGATCTTCGACAACGACCAG 
GACATCGCTCGCCTGGCCAGCCGTGTGCAGCCCTGGCTGGAGGCGCATCCGTACTGCCCGGGGTATTTGATC 
CGCGGCCACGGGCTGTACACTTGGGGTGCGCGCATGAGCGATGCCCTGCGTCAGGTGGAAGCTTTCGAGTTT 
CTGTTCGAGTGTGAACTGAAAGTACTGAGTCTGAGCCGATGA