ViewGene
Locus Name:
GeneID:
Location:

GeneID:3740
TrivialName: PA14_48640
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_48640
PAO1 Ortholog Locus:PA1211
Sequence Length:636
Protein Length:211
Start: 4326198
Stop: 4326833
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG04600.1|AE004551_4 (AE004551) hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 205/211 (97%), Positives = 206/211 (97%)
Sequence:
ATGAGCGGCGCGCTGCTGGTCTCGGGATTTTTCCTGCGCCGCTCCGCCTGGTCCGTGGAAGGCGCCGGCTGG
CGAAGCTGCGACCATCTGCGCGACGCGCCCGGATGCGACCTGGCGCATTGGCTGGACCAGGCCGCCGCCACG
CTGGCCGGCGAGGAGCGGGTGATACTCTGCGGCCACAGCTTCGGCGGCTACCTGGCGCAATGCCTGGCGGCC
CGCCTGGGCGAGCGCGCCGCGCACCTGTACCTGTTCAGCGCGCTGGTCAGCGAGGGCGGCGGCGCGCTGGAA
AGCTACCAGGACAGCGGCCAGGACAATCTCCTCGGGCTATGCCGCCTCGACCCGCTCGGAGGGCGGGTCCGC
CTGGAAGACCGCGCCGGCTTCCTCGAACTGCTCGGCGCCGAGGTGCCGACCAGCGCCAGCGAGCCAGCGCAA
TTGCTGATCGACTCGCCACGGCAGACTCGTCCAGCCTGCCCGGTCACCTACGTGGTGGCGGCCGCCGACCGG
CTCAGCCCGCCGTCGCTGCAACGTTCCTTCGCCCGTCGCCTGGACGCTCGGGTGCGGGAATACCCGGGCGGG
CACCTCGCCGCACTGGCGGACCCGCGCTTCCTTCGCGCCCTGATCGAATCTAATAATTAG
Translation:
MSGALLVSGFFLRRSAWSVEGAGWRSCDHLRDAPGCDLAHWLDQAAATLAGEERVILCGHSFGGYLAQCLAA
RLGERAAHLYLFSALVSEGGGALESYQDSGQDNLLGLCRLDPLGGRVRLEDRAGFLELLGAEVPTSASEPAQ
LLIDSPRQTRPACPVTYVVAAADRLSPPSLQRSFARRLDARVREYPGGHLAALADPRFLRALIESNN*
AnnotationID:3747GeneID:3740
AnnotatorUID: diggins
Modification Date/Time: 2005-02-21 20:08:48
Gene Name:
Confidence Code:4
GeneProduct:conserved hypothetical protein
Cell Localization:()
Synonyms:PA1211
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(14) Hypothetical, unclassified, unknown
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:






   
Genomic Context:






   
Comment:


















    ReferenceID:7483




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24625




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:37557




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3740_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3740
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5953
                           PA1211_tr
                           translation of PA1211
                           211
                           97.15
                           97.63
                           0
                           1067.0
     

     
     
166367
                           gb|AAG04600.1|AE004551_4
                           (AE004551) hypothetical protein PA1211 [Pseudomonas aeruginosa PAO1]
                           211
                           97.15
                           97.63
                           0
                           1067.0
     

     






      

          
GC ORFID: 46742How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA1211Glimmer Score: 

          
Start: 627710Stop: 627075

          
Length: 636


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TAGTruncated Stop: 

          
Homolog: t_PA1211 translation of PA1211Homolog Bit Score 415.0

          
Other Homologs:  t_PA1211 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGAGCGGCGCGCTGCTGGTCTCGGGATTTTTCCTGCGCCGCTCCGCCTGGTCCGTGGAAGGCGCCGGCTGG 
CGAAGCTGCGACCATCTGCGCGACGCGCCCGGATGCGACCTGGCGCATTGGCTGGACCAGGCCGCCGCCACG 
CTGGCCGGCGAGGAGCGGGTGATACTCTGCGGCCACAGCTTCGGCGGCTACCTGGCGCAATGCCTGGCGGCC 
CGCCTGGGCGAGCGCGCCGCGCACCTGTACCTGTTCAGCGCGCTGGTCAGCGAGGGCGGCGGCGCGCTGGAA 
AGCTACCAGGACAGCGGCCAGGACAATCTCCTCGGGCTATGCCGCCTCGACCCGCTCGGAGGGCGGGTCCGC 
CTGGAAGACCGCGCCGGCTTCCTCGAACTGCTCGGCGCCGAGGTGCCGACCAGCGCCAGCGAGCCAGCGCAA 
TTGCTGATCGACTCGCCACGGCAGACTCGTCCAGCCTGCCCGGTCACCTACGTGGTGGCGGCCGCCGACCGG 
CTCAGCCCGCCGTCGCTGCAACGTTCCTTCGCCCGTCGCCTGGACGCTCGGGTGCGGGAATACCCGGGCGGG 
CACCTCGCCGCACTGGCGGACCCGCGCTTCCTTCGCGCCCTGATCGAATCTAATAATTAG