ViewGene

Locus Name:
GeneID:
Location:

GeneID: 374

TrivialName: PA14_65940

AnnotatorUID:

Modification Date/Time: 2006-04-06 13:01:23

LocusName: PA14_65940

PAO1 Ortholog Locus: PA4986

Sequence Length: 1947

Protein Length: 648

Start: 5872546

Stop: 5874492

Strand: +

Type:

ChromosomeID: 2

Status: ACTIVE

Frame Discrepancy: FALSE

Missense Discrepancy: FALSE

Comments:
Homology: gb|AAG08371.1|AE004911_6 (AE004911) probable oxidoreductase [Pseudomonas aeruginosa PAO1] Identities = 647/648 (99%), Positives = 647/648 (99%)

Sequence:

GTGAATTTCCCGCACCTGTTCAGCCCCCTGGAAATCCGGGGCAAACGCCTGAAAAACCGCATCATGTCGAGC
GGCCACGACACGTCGATGCCTACCGACAACCTGGTCAACGAGCCACTCGTCGCCTATCACCGCGCCCGGGCC
CGCGGCGGCGCCGGACTGATCGTCATGCAGGTGGCGGGGGTCCACGACAGCGCGCGCTACACCTCGCACGTG
CTGATGGCCACCGACGATGCCTGCATCCCCGGCTACCGGCGGGTCGCCGAGGCCTGCCACGCCGAAGGATGC
GTGGTGCTGTCGCAGATCTTCCATCCCGGGCGCGAGATCATGGAATCCGCCGACGGCCTGCTGGCGGTGGCC
TATTCCGCCTCGGCCTCGCCCAACGAACGGTTCCGGGTGATGCCGCGCGAACTCGACCAGCCGCTGATCGAC
GAGATCGTCGCCGGCTACGCCGCCGCCGCGCGCCGCCTGCACCAGGCAGGGCTGGACGGGGTGGAGGTGGTC
GCCAGCCATGGCTACCTGCCGGCGCAATTCCTCAACCCGCGGGTGAACCGCCGCACGGATGGCTACAACGGC
GACCTCGATGCCCGCCTGCGTTTCCTCCGCGAAGTGCTGGCGGCGGTGCGCGCGGCCACCTCCGAGGACTTC
ATCGTCGGCCTGCGCCTGTCCGCCGACGAGCGCGACCCCGAGGGTCTCAGCGAAAGCGAGTCGCTGCAGGCG
GCCGAGGCGGTCCAGGGCGAGCTGGACTACCTGCACATCGTCGCCGGCACCTCGGCCTCCCTCGGCGGCGCC
ATCCATATCGTCCCGCCGATGGCCATCGAGCCGGCCTACCTGGCCCGCGAAGCCGGTACCTTCAAGGCGCGC
CTGGCGATCCCGCTGTTCGTCACCGGGCGCATCAACCAGCCCCAGGAGGCCGAGGCCATCCTCGCCCGAGGC
CAGGCCGACGTCTGCGGCATGACCCGCGCGCTGATCTGCGACCCGCAGATGCCGAACAAGGCCGAGGCCGGG
CGCAGCGACGACGTGCGCGCCTGCATCGCCTGCAACCAGGCCTGCATCGGACATTTCCACCGAGGCTATCCG
ATCTCCTGCATCCAGCACCCGGAAACCGGCCGCGAGCTGACCTACGCAACGCCCAATCCGGCCTCGCGGCGC
AAGCGCGTGCTGGTCGCCGGCGGCGGCCCGGCGGGGATGAAGGCGGCGGCGGTGGCGGCACAGCGCGGCCAC
GAGGTAGTGCTCTGCGAGGCCGGCGCCCAGCTCGGCGGCCAGGTCAACCTGGCGCAACTGCTGCCGCGCCGC
GCGGAATTCGGCGGCGCCTCCACCAACCTGCAACGGGAGATGCAACTGGCCGGCGTCGAGGTACGCCGCAAC
ACGCCGGTCGACCGCGCGCTGGTGGAGCGCGAACGGCCGGACCTGGTGATCGTCGCCACCGGCGCCGAACCC
TATTGGCCGCCTTTCGAGCGCGGCGGCGAGCTGCAGGTGGTGGATGCCTGGCAGGTGCTGCGCGGCGAGGTG
CGGGTCGGTCGCTCGGTGCTGGTCACCGACTGGCGGGGCGACTGGATCGGCCCCGGTATCGCGGAAAAGCTT
GTGCGCGAGGGCCACCAGGTGCGCCTGGCGGTGAACGGCACCCACTGCGGCGAGAGCCTGCCGCTGTACGTG
CGCGACCAGTTGGCCGGCGAACTGCACCGCCTGGGTATCCCGGTCACGCCCTACGCCCGCCTGTACGGCTGC
GACGATACCACGGTGTACATGCAGCACAGCGCCAGCGGCGAGGCGATGCTGTTCGAGGAGGTCGATACCCTG
GTGCTATGCCAGGGCCACCAGCCGGTGGACCGCCTGGCCGACAGCCTGCACGGCCTGGCGGAGGTGTTGCGG
ATCGGCGACTGCCTGGCCCCCCGCACCGCCGAGGAGGCGATCTACGAAGGGCTCAAGGCCGCCTGGAGCATC
TGA

Translation:

MNFPHLFSPLEIRGKRLKNRIMSSGHDTSMPTDNLVNEPLVAYHRARARGGAGLIVMQVAGVHDSARYTSHV
LMATDDACIPGYRRVAEACHAEGCVVLSQIFHPGREIMESADGLLAVAYSASASPNERFRVMPRELDQPLID
EIVAGYAAAARRLHQAGLDGVEVVASHGYLPAQFLNPRVNRRTDGYNGDLDARLRFLREVLAAVRAATSEDF
IVGLRLSADERDPEGLSESESLQAAEAVQGELDYLHIVAGTSASLGGAIHIVPPMAIEPAYLAREAGTFKAR
LAIPLFVTGRINQPQEAEAILARGQADVCGMTRALICDPQMPNKAEAGRSDDVRACIACNQACIGHFHRGYP
ISCIQHPETGRELTYATPNPASRRKRVLVAGGGPAGMKAAAVAAQRGHEVVLCEAGAQLGGQVNLAQLLPRR
AEFGGASTNLQREMQLAGVEVRRNTPVDRALVERERPDLVIVATGAEPYWPPFERGGELQVVDAWQVLRGEV
RVGRSVLVTDWRGDWIGPGIAEKLVREGHQVRLAVNGTHCGESLPLYVRDQLAGELHRLGIPVTPYARLYGC
DDTTVYMQHSASGEAMLFEEVDTLVLCQGHQPVDRLADSLHGLAEVLRIGDCLAPRTAEEAIYEGLKAAWSI
*

AnnotationID:383 GeneID:374

AnnotatorUID: diggins

Modification Date/Time: 2005-03-14 07:07:27

Gene Name:

Confidence Code: 3

GeneProduct: putative NADH:flavin oxidoreductase

Cell Localization: ()

Synonyms: PA4986

Cell Localization Confidence Code: 5

MolecularFunction:

Functional Category: (12) Energy metabolism

Alternate Gene Product Name:

Functional Category Confidence Code: 5

COGs: COG1902,pfam00724

Secondary Functional Category(ies):

EC Number:

Status: ACTIVE

Pathway:

Homology:

>gb|AAN68477.1|AE016480_4 (AE016784) oxidoreductase, FMN-binding [Pseudomonas putida KT2440]
          Length = 650

 Score = 1080 bits (2792), Expect = 0.0
 Identities = 536/646 (82%), Positives = 577/646 (89%)

Structural Features:

COG1902, NemA, NADH:flavin oxidoreductases, Old Yellow Enzyme family 
[Energy production and conversion]
CD-Length = 363 residues, 100.0% aligned
Score =  339 bits (871), Expect = 5e-94
Identities = 150/370 (40%), Positives = 206/370 (55%), Gaps = 12/370 (3%)

pfam00724, Oxidored_FMN, NADH:flavin oxidoreductase / NADH oxidase family.
CD-Length = 335 residues,  99.7% aligned
Score =  214 bits (546), Expect = 3e-56
Identities = 113/341 (33%), Positives = 164/341 (48%), Gaps = 13/341 (3%)

Genomic Context:

Comment:

ReferenceID:14125

Author/Investigator(s): GenNotator

Title:

PubMed:

MedLine:

Source:

Reference Type: BLASTP

Data:

URL:

ReferenceID:17893

Author/Investigator(s): GenNotator

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: RPSBLAST

Data:

URL:

ReferenceID:35064

Author/Investigator(s):

Title: CDD Search

PubMed:

MedLine:

Source:

Reference Type: Misc (text/plain)

Data: 374_cdd.html

URL:

Homologs By Global Alignment

Gene ID:374

Identity:

10%

20%

30%

40%

50%

60%

70%

80%

90%

100%

HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score

625 PA4986_tr translation of PA4986 648 99.84 99.84 0 3351.0

29337 gb|AAG08371.1|AE004911_6 (AE004911) probable oxidoreductase [Pseudomonas aeruginosa PAO1] 648 99.69 99.84 0 3348.0

29338 gb|AAN68477.1|AE016480_4 (AE016784) oxidoreductase, FMN-binding [Pseudomonas putida KT2440] 650 82.46 88.76 2 2790.0

GC ORFID: `43376`	How Found: `BLASTX`
GC_TrimmedSeqID: `69`	Blast Result ID
Subject Sequence Name: `t_PA4986`	Glimmer Score:
Start: `5136229`	Stop: `5138175`
Length: `1947`
Start Codon: `GTG`	Truncated Start:
Stop Codon: `TGA`	Truncated Stop:
Homolog: `t_PA4986 translation of PA4986`	Homolog Bit Score `1295.0`
Other Homologs: `t_PA4986 (ORF: GLIMMER)`
GC ORF Sequence
GTGAATTTCCCGCACCTGTTCAGCCCCCTGGAAATCCGGGGCAAACGCCTGAAAAACCGCATCATGTCGAGC GGCCACGACACGTCGATGCCTACCGACAACCTGGTCAACGAGCCACTCGTCGCCTATCACCGCGCCCGGGCC CGCGGCGGCGCCGGACTGATCGTCATGCAGGTGGCGGGGGTCCACGACAGCGCGCGCTACACCTCGCACGTG CTGATGGCCACCGACGATGCCTGCATCCCCGGCTACCGGCGGGTCGCCGAGGCCTGCCACGCCGAAGGATGC GTGGTGCTGTCGCAGATCTTCCATCCCGGGCGCGAGATCATGGAATCCGCCGACGGCCTGCTGGCGGTGGCC TATTCCGCCTCGGCCTCGCCCAACGAACGGTTCCGGGTGATGCCGCGCGAACTCGACCAGCCGCTGATCGAC GAGATCGTCGCCGGCTACGCCGCCGCCGCGCGCCGCCTGCACCAGGCAGGGCTGGACGGGGTGGAGGTGGTC GCCAGCCATGGCTACCTGCCGGCGCAATTCCTCAACCCGCGGGTGAACCGCCGCACGGATGGCTACAACGGC GACCTCGATGCCCGCCTGCGTTTCCTCCGCGAAGTGCTGGCGGCGGTGCGCGCGGCCACCTCCGAGGACTTC ATCGTCGGCCTGCGCCTGTCCGCCGACGAGCGCGACCCCGAGGGTCTCAGCGAAAGCGAGTCGCTGCAGGCG GCCGAGGCGGTCCAGGGCGAGCTGGACTACCTGCACATCGTCGCCGGCACCTCGGCCTCCCTCGGCGGCGCC ATCCATATCGTCCCGCCGATGGCCATCGAGCCGGCCTACCTGGCCCGCGAAGCCGGTACCTTCAAGGCGCGC CTGGCGATCCCGCTGTTCGTCACCGGGCGCATCAACCAGCCCCAGGAGGCCGAGGCCATCCTCGCCCGAGGC CAGGCCGACGTCTGCGGCATGACCCGCGCGCTGATCTGCGACCCGCAGATGCCGAACAAGGCCGAGGCCGGG CGCAGCGACGACGTGCGCGCCTGCATCGCCTGCAACCAGGCCTGCATCGGACATTTCCACCGAGGCTATCCG ATCTCCTGCATCCAGCACCCGGAAACCGGCCGCGAGCTGACCTACGCAACGCCCAATCCGGCCTCGCGGCGC AAGCGCGTGCTGGTCGCCGGCGGCGGCCCGGCGGGGATGAAGGCGGCGGCGGTGGCGGCACAGCGCGGCCAC GAGGTAGTGCTCTGCGAGGCCGGCGCCCAGCTCGGCGGCCAGGTCAACCTGGCGCAACTGCTGCCGCGCCGC GCGGAATTCGGCGGCGCCTCCACCAACCTGCAACGGGAGATGCAACTGGCCGGCGTCGAGGTACGCCGCAAC ACGCCGGTCGACCGCGCGCTGGTGGAGCGCGAACGGCCGGACCTGGTGATCGTCGCCACCGGCGCCGAACCC TATTGGCCGCCTTTCGAGCGCGGCGGCGAGCTGCAGGTGGTGGATGCCTGGCAGGTGCTGCGCGGCGAGGTG CGGGTCGGTCGCTCGGTGCTGGTCACCGACTGGCGGGGCGACTGGATCGGCCCCGGTATCGCGGAAAAGCTT GTGCGCGAGGGCCACCAGGTGCGCCTGGCGGTGAACGGCACCCACTGCGGCGAGAGCCTGCCGCTGTACGTG CGCGACCAGTTGGCCGGCGAACTGCACCGCCTGGGTATCCCGGTCACGCCCTACGCCCGCCTGTACGGCTGC GACGATACCACGGTGTACATGCAGCACAGCGCCAGCGGCGAGGCGATGCTGTTCGAGGAGGTCGATACCCTG GTGCTATGCCAGGGCCACCAGCCGGTGGACCGCCTGGCCGACAGCCTGCACGGCCTGGCGGAGGTGTTGCGG ATCGGCGACTGCCTGGCCCCCCGCACCGCCGAGGAGGCGATCTACGAAGGGCTCAAGGCCGCCTGGAGCATC TGA