ViewGene
Locus Name:
GeneID:
Location:

GeneID:3739
TrivialName: PA14_65670
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_65670
PAO1 Ortholog Locus:PA4968
Sequence Length:621
Protein Length:206
Start: 5849939
Stop: 5849319
Strand: -
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG08353.1|AE004909_9 (AE004909) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
Identities = 203/206 (98%), Positives = 203/206 (98%)
Sequence:
ATGACTGCGACCAGCCCATCCCTGCTGTATATCCACGGCTTCAACAGTTCGCCCGAATCGCACAAGGCGCGC
CAGCTGCAGGCGGCCTTCGGCCACTTGGGCCTGGCCGAAGGCCTGCGCGTCCCGGCCCTGCACCATCACCCA
CGGCAGGCCATCGCCCAGTTGGAGCGGGCCATCGCCGAGCTCGGGCGACCGGTGCTGGTCGGCAGCTCCCTG
GGTGGCTACTATGCGACCCATTTGGCGGAGCGCCATGGCCTGGCGGCGATCCTGGTCAATCCGGCGGTCGCC
CCGCATCGCTCCTTCGACGGCTACCTGGGCGCGCAGACCAACCACTACAGCGGCGAGACCTGGGAACTCACC
GAGGACCACGTGGCGGCGCTGGCCGAACTGGAAGTCACGCGCCTGCAACGTCCCGAACGCTACCAGGTATGG
CTGCAGACCGCCGACGAAACCCTCGACTATCGCGCCGCGCAGGCCTTCTACCGAGCCTGCGCGCTACGCATC
CAGGCCGGCGGCGACCACGGCTTCCAGGGCTTCGCCCGGCACCTGCCGGCGCTGCTGGCGTTCGCCGGCTAC
CCGTCGGCGCTGTGGCGCGACACCGATTTTTCGACTTTTGACTGA
Translation:
MTATSPSLLYIHGFNSSPESHKARQLQAAFGHLGLAEGLRVPALHHHPRQAIAQLERAIAELGRPVLVGSSL
GGYYATHLAERHGLAAILVNPAVAPHRSFDGYLGAQTNHYSGETWELTEDHVAALAELEVTRLQRPERYQVW
LQTADETLDYRAAQAFYRACALRIQAGGDHGFQGFARHLPALLAFAGYPSALWRDTDFSTFD*
AnnotationID:3746GeneID:3739
AnnotatorUID: diggins
Modification Date/Time: 2005-03-13 17:05:51
Gene Name:
Confidence Code:3
GeneProduct:putative esterase
Cell Localization:()
Synonyms:PA4968
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG3150
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:






 
Homology:






 
Structural Features:
COG3150, COG3150, Predicted esterase
CD-Length = 191 residues, 100.0% aligned
Score =  244 bits (624), Expect = 5e-66
Identities = 87/191 (45%), Positives = 111/191 (58%), Gaps = 2/191 (1%)






   
Genomic Context:






   
Comment:


















    ReferenceID:7481




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24623




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:35054




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3739_cdd.html


    		




 
URL:









           
Homologs By Global Alignment 

           

       



     
Gene ID:3739
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5952
                           PA4968_tr
                           translation of PA4968
                           206
                           98.54
                           98.54
                           0
                           1070.0
     

     
     
166352
                           gb|AAG08353.1|AE004909_9
                           (AE004909) conserved hypothetical protein [Pseudomonas aeruginosa PAO1]
                           206
                           98.54
                           98.54
                           0
                           1070.0
     

     
     
166354
                           gb|AAO58392.1|
                           (AE016874) conserved hypothetical protein [Pseudomonas syringae pv. tomato str. DC3000]
                           206
                           67.47
                           78.64
                           1
                           730.0
     

     
     
166353
                           gb|AAN70483.1|AE016689_11
                           (AE016792) conserved hypothetical protein [Pseudomonas putida KT2440]
                           248
                           61.29
                           66.12
                           43
                           781.0
     

     
     
166355
                           emb|CAD16488.1|
                           (AL646071) CONSERVED HYPOTHETICAL PROTEIN [Ralstonia solanacearum]
                           216
                           42.12
                           53.24
                           16
                           411.0
     

     






      

          
GC ORFID: 46741How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA4968Glimmer Score: 

          
Start: 5113621Stop: 5113001

          
Length: 621


          
Start Codon: ATGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA4968 translation of PA4968Homolog Bit Score 416.0

          
Other Homologs:  psyr_15may02_Scaffold2_revised_gene3410 (ORF: BLASTX 283.0), t_PA4968 (ORF: GLIMMER)

          
GC ORF Sequence

           
ATGACTGCGACCAGCCCATCCCTGCTGTATATCCACGGCTTCAACAGTTCGCCCGAATCGCACAAGGCGCGC 
CAGCTGCAGGCGGCCTTCGGCCACTTGGGCCTGGCCGAAGGCCTGCGCGTCCCGGCCCTGCACCATCACCCA 
CGGCAGGCCATCGCCCAGTTGGAGCGGGCCATCGCCGAGCTCGGGCGACCGGTGCTGGTCGGCAGCTCCCTG 
GGTGGCTACTATGCGACCCATTTGGCGGAGCGCCATGGCCTGGCGGCGATCCTGGTCAATCCGGCGGTCGCC 
CCGCATCGCTCCTTCGACGGCTACCTGGGCGCGCAGACCAACCACTACAGCGGCGAGACCTGGGAACTCACC 
GAGGACCACGTGGCGGCGCTGGCCGAACTGGAAGTCACGCGCCTGCAACGTCCCGAACGCTACCAGGTATGG 
CTGCAGACCGCCGACGAAACCCTCGACTATCGCGCCGCGCAGGCCTTCTACCGAGCCTGCGCGCTACGCATC 
CAGGCCGGCGGCGACCACGGCTTCCAGGGCTTCGCCCGGCACCTGCCGGCGCTGCTGGCGTTCGCCGGCTAC 
CCGTCGGCGCTGTGGCGCGACACCGATTTTTCGACTTTTGACTGA