ViewGene

Locus Name:
GeneID:
Location:

GeneID:3737
TrivialName: PA14_11860
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_11860
PAO1 Ortholog Locus:PA4019
Sequence Length:630
Protein Length:209
Start: 1027770
Stop: 1028399
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG07406.1|AE004818_12 (AE004818) probable aromatic acid decarboxylase [Pseudomonas aeruginosa PAO1]
Identities = 209/209 (100%), Positives = 209/209 (100%)
Sequence:
ATGAGCGGTCCGGAACGCATTACCCTGGCGATGACCGGCGCCTCCGGCGCCCAGTACGGCCTGCGCTTGCTC
GATTGCCTGGTGCAGGAAGAGCGCGAGGTGCACTTCCTGATCTCCAAGGCCGCGCAACTGGTGATGGCCACC
GAGACCGACGTGGCCCTGCCGGCCAAACCGCAGGCGATGCAGGCCTTCCTCACCGAATATTGTGGTGCCGCC
GCCGGACAGATCCGCGTGTTCGGCCAGAACGACTGGATGGCGCCGCCGGCCTCCGGCTCCAGCGCGCCCAAT
GCCATGGTGATCTGCCCGTGTTCCACCGGCACCCTGTCGGCGGTCGCCACGGGGGCCTGCAACAACCTCATC
GAGCGCGCCGCCGATGTCGCCCTGAAGGAGCGCCGGCCGCTGGTGCTGGTGCCGCGCGAGGCGCCGTTCTCC
AGTATCCACCTGGAAAACATGCTCAAGCTGTCCAACCTCGGCGCGGTGATCCTGCCGGCGGCGCCGGGCTTC
TACCACCAGCCGCAATCGGTGGAGGACCTGGTGGACTTCGTCGTCGCGCGAATCCTCAACACCCTGGGGATT
CCCCAGGACATGCTGCCGCGCTGGGGGGAACAGCACCTTGTCAGCGACGAGTAG
Translation:
MSGPERITLAMTGASGAQYGLRLLDCLVQEEREVHFLISKAAQLVMATETDVALPAKPQAMQAFLTEYCGAA
AGQIRVFGQNDWMAPPASGSSAPNAMVICPCSTGTLSAVATGACNNLIERAADVALKERRPLVLVPREAPFS
SIHLENMLKLSNLGAVILPAAPGFYHQPQSVEDLVDFVVARILNTLGIPQDMLPRWGEQHLVSDE*
AnnotationID:3744GeneID:3737
AnnotatorUID: urbach
Modification Date/Time: 2004-09-14 14:02:17
Gene Name:
Confidence Code:3
GeneProduct:probable aromatic acid decarboxylase
Cell Localization:()
Synonyms:PA4019
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(20) Putative enzymes
Alternate Gene Product Name:
Functional Category Confidence Code:5
COGs:COG0163
Secondary Functional Category(ies):
EC Number:
Status:ACTIVE
Pathway:
Homology:
ref|NP_010827.1| Phenylacrylic acid decarboxylase; Pad1p [Saccharomyces cerevisiae]
 sp|P33751|PAD1_YEAST Phenylacrylic acid decarboxylase (PAD)
 pir||S62017 phenylacrylic acid decarboxylase - yeast (Saccharomyces cerevisiae)
 gb|AAB64980.1| Pad1p: phenylacrylic acid decarboxylase;
YDR538W [Saccharomyces cerevisiae]
Length = 242
Score =  145 bits (365), Expect = 6e-34
Identities = 83/197 (42%), Positives = 112/197 (56%), Gaps = 14/197 (7%)

http://www.ncbi.nlm.nih.gov/entrez/viewer.fcgi?db=protein&val=1709555
Structural Features:
gnl|CDD|10038 COG0163, UbiX, 3-polyprenyl-4-hydroxybenzoate decarboxylase
[Coenzyme metabolism]
Length = 191
Score =  263 bits (675), Expect = 2e-71
Identities = 101/202 (50%), Positives = 126/202 (62%), Gaps = 12/202 (5%)
Genomic Context:
Comment:
ReferenceID:7477
Author/Investigator(s): GenNotator
Title:
PubMed:
MedLine:
Source:
Reference Type:BLASTP
Data:
URL:
ReferenceID:24619
Author/Investigator(s): GenNotator
Title: CDD Search
PubMed:
MedLine:
Source:
Reference Type:RPSBLAST
Data:
URL:
Homologs By Global Alignment
Gene ID:3737

Identity:

0% 10% 20% 30% 40% 50% 60% 70% 80% 90% 100%
HomologID Accession Description Length PctIdentity PctSimilarity Gaps Score
5950 PA4019_tr translation of PA4019 209 99.99 99.99 0 1070.0
166259 gb|AAG07406.1|AE004818_12 (AE004818) probable aromatic acid decarboxylase [Pseudomonas aeruginosa PAO1] 209 99.99 99.99 0 1070.0
166260 gb|AAN66175.1|AE016245_4 (AE016776) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Pseudomonas putida KT2440] 209 84.68 91.86 0 923.0
166261 gb|AAO54272.1| (AE016858) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase, putative [Pseudomonas syringae pv. tomato str. DC3000] 209 81.33 92.34 0 904.0
166262 gb|AAF95682.1| (AE004323) 3-octaprenyl-4-hydroxybenzoate carboxy-lyase [Vibrio cholerae O1 biovar eltor str. N16961] 211 59.24 75.82 2 647.0
GC ORFID: 46739How Found: BLASTX
GC_TrimmedSeqID: 69Blast Result ID
Subject Sequence Name: t_PA4019Glimmer Score:
Start: 3926168Stop: 3925539
Length: 630
Start Codon: ATGTruncated Start:
Stop Codon: TAGTruncated Stop:
Homolog: t_PA4019 translation of PA4019Homolog Bit Score 416.0
Other Homologs: psyr_15may02_Scaffold2_revised_gene3474 (ORF: BLASTX 351.0), t_PA4019 (ORF: GLIMMER)
GC ORF Sequence
ATGAGCGGTCCGGAACGCATTACCCTGGCGATGACCGGCGCCTCCGGCGCCCAGTACGGCCTGCGCTTGCTC
GATTGCCTGGTGCAGGAAGAGCGCGAGGTGCACTTCCTGATCTCCAAGGCCGCGCAACTGGTGATGGCCACC
GAGACCGACGTGGCCCTGCCGGCCAAACCGCAGGCGATGCAGGCCTTCCTCACCGAATATTGTGGTGCCGCC
GCCGGACAGATCCGCGTGTTCGGCCAGAACGACTGGATGGCGCCGCCGGCCTCCGGCTCCAGCGCGCCCAAT
GCCATGGTGATCTGCCCGTGTTCCACCGGCACCCTGTCGGCGGTCGCCACGGGGGCCTGCAACAACCTCATC
GAGCGCGCCGCCGATGTCGCCCTGAAGGAGCGCCGGCCGCTGGTGCTGGTGCCGCGCGAGGCGCCGTTCTCC
AGTATCCACCTGGAAAACATGCTCAAGCTGTCCAACCTCGGCGCGGTGATCCTGCCGGCGGCGCCGGGCTTC
TACCACCAGCCGCAATCGGTGGAGGACCTGGTGGACTTCGTCGTCGCGCGAATCCTCAACACCCTGGGGATT
CCCCAGGACATGCTGCCGCGCTGGGGGGAACAGCACCTTGTCAGCGACGAGTAG