ViewGene
Locus Name:
GeneID:
Location:

GeneID:3736
TrivialName: PA14_23850
AnnotatorUID:
Modification Date/Time:2006-04-06 13:01:23
LocusName:PA14_23850
PAO1 Ortholog Locus:PA3113
Sequence Length:636
Protein Length:211
Start: 2073825
Stop: 2074460
Strand: +
Type:
ChromosomeID:2
Status: ACTIVE
Frame Discrepancy: FALSE
Missense Discrepancy:FALSE
Comments:
Homology: gb|AAG06501.1|AE004735_8 (AE004735) N-(5'phosphoribosyl)anthranilate (PRA) isomerase [Pseudomonas aeruginosa PAO1]
Identities = 210/211 (99%), Positives = 210/211 (99%)
Sequence:
TTGCCAGCCGTTCGCATCAAGATCTGCGGTATCACCCGAGTCGAGGACGCCCTCGCCGCCGCCGCGGCGGGC
GCCGATGCCATCGGCCTGGTGTTCTATGCGAAGAGCCCGCGGGCGGTGGATATCCATCGGGCGCGGGAGATC
GTTCGTGCCCTGCCGCCGTTCGTGACCAGCGTCGGCCTGTTCGTCAACGCCAGCCGCTGCGAACTGGGCGAG
ATTCTCGATGCGGTGCCGCTGGACCTGCTGCAATTCCATGGCGACGAGCGCGCCGAGGACTGCGAGGGACAT
CGGCGACCCTACCTGAAAGCCCTGCGGATGAAGCCCGGCGACGACATCGTCGGGCGCGCGGCGGCATATCCG
GGAGCTGCCGGGATTCTCCTGGATACCTATGTGGAAGGCGTGCCCGGCGGCACGGGGGCGGCGTTCGACTGG
TCGCTGGTGCCGGCCGACCTGGGCAAACCCCTGGTGCTGGCCGGCGGTCTGACGCCGGATAACGTCGGCAGG
GCAGTCGAGCAGGTCAAGCCCTACGCGGTGGACGTCAGCGGTGGCGTCGAGGCGAGCAAGGGAATCAAGGAT
GCGGCGAGGGTCCGCGCGTTCGTGGACGCGGTGCGTTCGCGGCGCCGCGACGAGACATGA
Translation:
MPAVRIKICGITRVEDALAAAAAGADAIGLVFYAKSPRAVDIHRAREIVRALPPFVTSVGLFVNASRCELGE
ILDAVPLDLLQFHGDERAEDCEGHRRPYLKALRMKPGDDIVGRAAAYPGAAGILLDTYVEGVPGGTGAAFDW
SLVPADLGKPLVLAGGLTPDNVGRAVEQVKPYAVDVSGGVEASKGIKDAARVRAFVDAVRSRRRDET*
AnnotationID:3743GeneID:3736
AnnotatorUID: diggins
Modification Date/Time: 2005-04-13 07:07:31
Gene Name:trpF
Confidence Code:1
GeneProduct:phosphoribosyl anthranilate isomerase
Cell Localization:()
Synonyms:
Cell Localization Confidence Code:5
MolecularFunction:
Functional Category:(2) Amino acid biosynthesis and metabolism
Alternate Gene Product Name:N-(5'phosphoribosyl)anthranilate isomerase
Functional Category Confidence Code:5
COGs:COG0135,pfam00697
Secondary Functional Category(ies):
EC Number:5.3.1.24
Status:ACTIVE
Pathway:






 
Homology:
>gb|AAN67609.1|AE016390_8 (AE016781) N-(5'phosphoribosyl)anthranilate isomerase [Pseudomonas
           putida KT2440]
          Length = 206

 Score =  312 bits (799), Expect = 1e-84
 Identities = 151/204 (74%), Positives = 174/204 (85%)

>gb|AAF41106.1| (AE002423) N-(5'-phosphoribosyl)anthranilate isomerase [Neisseria
           meningitidis MC58]
          Length = 208

 Score =  213 bits (542), Expect = 6e-55
 Identities = 113/200 (56%), Positives = 135/200 (67%)








 
Structural Features:
COG0135, TrpF, Phosphoribosylanthranilate isomerase 
[Amino acid transport and metabolism]
CD-Length = 208 residues,  99.5% aligned
Score =  223 bits (570), Expect = 1e-59
Identities = 103/208 (49%), Positives = 132/208 (63%), Gaps = 6/208 (2%)

pfam00697, PRAI, N-(5'phosphoribosyl)anthranilate (PRA) isomerase.
CD-Length = 194 residues, 100.0% aligned
Score =  158 bits (401), Expect = 5e-40
Identities = 85/201 (42%), Positives = 113/201 (56%), Gaps = 11/201 (5%)







   
Genomic Context:






   
Comment:


















    ReferenceID:14909




  
Author/Investigator(s):
        GenNotator





  
Title:
        




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:BLASTP 







    
Data:


    		




 
URL:

















    ReferenceID:24617




  
Author/Investigator(s):
        GenNotator





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:RPSBLAST 







    
Data:


    		




 
URL:

















    ReferenceID:32412




  
Author/Investigator(s):
        





  
Title:
        CDD Search




  
PubMed:
        


MedLine:
        




    
Source:






    
Reference Type:Misc (text/plain)







    
Data:3736_cdd.html


    		




 
URL:

















    ReferenceID:33910




  
Author/Investigator(s):
        Murata T.





  
Title:
        The trpF nucleotide sequence and its promoter analysis in Pseudomonas aeruginosa.




  
PubMed:
        8867605


MedLine:
        




    
Source:
Microbiol Immunol. 1996;40(2):107-14.






    
Reference Type:Journal 







    
Data:


    		




 
URL:http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?cmd=Retrieve&db=pubmed&dopt=Abstract&list_uids=8867605









           
Homologs By Global Alignment 

           

       



     
Gene ID:3736
           
Identity:

                               
                                   0%
                               
                                   10%
                               
                                   20%
                               
                                   30%
                               
                                   40%
                               
                                   50%
                               
                                   60%
                               
                                   70%
                               
                                   80%
                               
                                   90%
                               
                                   100%
                               
                             

                           

     
HomologID
                           Accession
                           Description
                           Length
                           PctIdentity
                           PctSimilarity
                           Gaps
                           Score
     

     
     
5949
                           PA3113_tr
                           translation of PA3113
                           211
                           99.52
                           99.52
                           0
                           1069.0
     

     
     
166231
                           gb|AAG06501.1|AE004735_8
                           (AE004735) N-(5'phosphoribosyl)anthranilate (PRA) isomerase [Pseudomonas aeruginosa PAO1]
                           211
                           99.05
                           99.52
                           0
                           1067.0
     

     
     
166232
                           dbj|BAA12028.1|
                           (D83654) phosphoribosyl anthranilate isomerase [Pseudomonas aeruginosa]
                           211
                           99.05
                           99.52
                           0
                           1067.0
     

     
     
166233
                           gb|AAN67609.1|AE016390_8
                           (AE016781) N-(5'phosphoribosyl)anthranilate isomerase [Pseudomonas putida KT2440]
                           211
                           71.09
                           82.46
                           5
                           795.0
     

     
     
166234
                           gb|AAO57285.1|
                           (AE016869) N-(5'phosphoribosyl)anthranilate isomerase [Pseudomonas syringae pv. tomato str. DC3000]
                           211
                           67.29
                           78.67
                           5
                           748.0
     

     






      

          
GC ORFID: 46738How Found: BLASTX

          
GC_TrimmedSeqID: 69Blast Result ID

          
Subject Sequence Name: t_PA3113Glimmer Score: 

          
Start: 2880106Stop: 2879471

          
Length: 636


          
Start Codon: TTGTruncated Start:

          
Stop Codon: TGATruncated Stop: 

          
Homolog: t_PA3113 translation of PA3113Homolog Bit Score 416.0

          
Other Homologs:  psyr_15may02_Scaffold16_revised_gene2625 (ORF: BLASTX 295.0), t_PA3113 (ORF: GLIMMER)

          
GC ORF Sequence

           
TTGCCAGCCGTTCGCATCAAGATCTGCGGTATCACCCGAGTCGAGGACGCCCTCGCCGCCGCCGCGGCGGGC 
GCCGATGCCATCGGCCTGGTGTTCTATGCGAAGAGCCCGCGGGCGGTGGATATCCATCGGGCGCGGGAGATC 
GTTCGTGCCCTGCCGCCGTTCGTGACCAGCGTCGGCCTGTTCGTCAACGCCAGCCGCTGCGAACTGGGCGAG 
ATTCTCGATGCGGTGCCGCTGGACCTGCTGCAATTCCATGGCGACGAGCGCGCCGAGGACTGCGAGGGACAT 
CGGCGACCCTACCTGAAAGCCCTGCGGATGAAGCCCGGCGACGACATCGTCGGGCGCGCGGCGGCATATCCG 
GGAGCTGCCGGGATTCTCCTGGATACCTATGTGGAAGGCGTGCCCGGCGGCACGGGGGCGGCGTTCGACTGG 
TCGCTGGTGCCGGCCGACCTGGGCAAACCCCTGGTGCTGGCCGGCGGTCTGACGCCGGATAACGTCGGCAGG 
GCAGTCGAGCAGGTCAAGCCCTACGCGGTGGACGTCAGCGGTGGCGTCGAGGCGAGCAAGGGAATCAAGGAT 
GCGGCGAGGGTCCGCGCGTTCGTGGACGCGGTGCGTTCGCGGCGCCGCGACGAGACATGA